Bioconductor PPI

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PPI STRINGdb

updated 4.0 years ago by damian.szk ▴ 110 • written 4.1 years ago by Ashish Jain ▴ 10

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1.6k

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ppi stringdb mus musculus

updated 7.4 years ago by damian.szk ▴ 110 • written 7.4 years ago by hkarakurt ▴ 20

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1.3k

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ppi network analysis igraph

9.3 years ago Abhishek Pratap ▴ 190

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1.2k

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PPI

9.8 years ago cihaterdogan • 0

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2.5k

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ppi bioinformatics

updated 10.0 years ago by Martin Morgan 25k • written 10.0 years ago by beingseema03 ▴ 10

5 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

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Can NanoString data be analyzed using DESeq2?

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