Bioconductor PPI

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958

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PPI STRINGdb

updated 3.2 years ago by damian.szk ▴ 110 • written 3.2 years ago by Ashish Jain ▴ 10

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1.2k

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ppi stringdb mus musculus

updated 6.6 years ago by damian.szk ▴ 110 • written 6.6 years ago by hkarakurt ▴ 20

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1.1k

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ppi network analysis igraph

8.4 years ago Abhishek Pratap ▴ 190

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1.0k

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PPI

9.0 years ago • updated 8.9 years ago cihaterdogan • 0

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2.2k

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ppi bioinformatics

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by beingseema03 ▴ 10

5 results • Page 1 of 1

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

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Answer: DESeq Input from Salmon + tximport/tximeta

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