Bioconductor PRIDE

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PRIDE rpx PXDataset

updated 3.4 years ago by Laurent Gatto 1.6k • written 3.4 years ago by gianluigi.caltabiano • 0

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MSnbase Bioconductor PRIDE rpx PXDataset

updated 3.4 years ago by Laurent Gatto 1.6k • written 6.7 years ago by fgol ▴ 10

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MassSpectrometry PRIDE

updated 10.9 years ago by Laurent Gatto 1.6k • written 10.9 years ago by paulamirini2008 • 0

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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0

The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…

Answer: Gatins Set error by James W. MacDonald 68k

`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.

Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k

Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…

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Comment: readDNAStringSet with non DNA characters

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