Bioconductor PRIDE

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PRIDE rpx PXDataset

updated 3.3 years ago by Laurent Gatto 1.6k • written 3.3 years ago by gianluigi.caltabiano • 0

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MSnbase Bioconductor PRIDE rpx PXDataset

updated 3.3 years ago by Laurent Gatto 1.6k • written 6.6 years ago by fgol ▴ 10

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MassSpectrometry PRIDE

updated 10.9 years ago by Laurent Gatto 1.6k • written 10.9 years ago by paulamirini2008 • 0

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Comment: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by ATpoint ★ 4.9k

Not that this is a good way of doing it, but if I have single-cell data and the gut feeling that methods disagree a lot then I usually run …

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

Comment: voomLmFit fitted log-CPM values by Lina ▴ 10

Is the output from fitted(v) in the log2 CPM scale? or CPM scale?

Answer: voomLmFit fitted log-CPM values by Gordon Smyth 53k

Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```

Comment: EuroBioC2024 abstract submission is open! by Finnianfly • 0

What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…

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A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

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