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Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 2.1 years ago by
Michael Love
42k • written 2.1 years ago by
Chiara
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989
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R circlize package problem with drawing histogram
circlize
R
Circos
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4.6 years ago
marvel479
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Visualizing motif instances in peak data
motifs
TF
peakset
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7.7 years ago
rbronste
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missMethyl package: gsameth bias plots
missmethyl
plots
bias
package
updated 7.7 years ago by
belinda.phipson
▴ 40 • written 7.7 years ago by
evani.radiya.dixit
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Answer: Is it possible to parallelise saveHDF5SummarizedExperiment
by
Hervé Pagès
16k
Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…
Comment: Tximport with RSEM error
by
Michael Love
42k
Would you post a new issue with example code and maybe what the files look like?
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Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
A: GOseq analysis with only upregulated or downregulated genes
A: GOseq analysis with only upregulated or downregulated genes
Answer: Properly constructing a hypergeometric test
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