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Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 2.1 years ago by
Michael Love
42k • written 2.1 years ago by
Chiara
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995
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R circlize package problem with drawing histogram
circlize
R
Circos
Plots
4.6 years ago
marvel479
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Visualizing motif instances in peak data
motifs
TF
peakset
plots
7.7 years ago
rbronste
▴ 60
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missMethyl package: gsameth bias plots
missmethyl
plots
bias
package
updated 7.7 years ago by
belinda.phipson
▴ 40 • written 7.7 years ago by
evani.radiya.dixit
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Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Comment: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
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A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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