Showing : Heatmaps • reset
2
votes
5
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1.8k
views
Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 8 months ago by ▴ 110 • written 8 months ago by ▴ 10
1
vote
5
replies
1.7k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 9 months ago by 68k • written 9 months ago by ▴ 10
0
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2
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1.2k
views
DESeq2 Heatmap
heatmaps
updated 12 months ago by ★ 1.4k • written 12 months ago by • 0
0
votes
3
replies
2.1k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 15 months ago by 68k • written 15 months ago by ▴ 50
1
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5
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2.5k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 17 months ago by • 0
2
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1
reply
1.9k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 18 months ago by ★ 5.0k • written 18 months ago by • 0
0
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0
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538
views
Error in drawHeatmap function
GeneOverlap heatmaps
20 months ago Johanna • 0
0
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2
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1.4k
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 20 months ago by 68k • written 20 months ago by • 0
0
votes
1
reply
2.9k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
0
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1
reply
2.9k
views
edgeR heatmap construction and interpretation
heatmaps
updated 2.3 years ago by 53k • written 2.3 years ago by • 0
0
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3
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1.6k
views
Installing Gpart
gpart heat heatmaps
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
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2
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1.3k
views
Drawing a heatmap with only limited genes
heatmaps
updated 2.6 years ago by • 0 • written 2.6 years ago by • 0
1
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1
reply
1.0k
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.8 years ago by ▴ 90 • written 2.9 years ago by ▴ 10
0
votes
1
reply
1.2k
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.9 years ago by ★ 5.0k • written 2.9 years ago by • 0
0
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2
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2.0k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.9 years ago shuangshuang • 0
0
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0
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1.6k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
3.0 years ago gianni.drm • 0
0
votes
1
reply
1.4k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 3.0 years ago by ★ 5.0k • written 3.0 years ago by ▴ 10
2
votes
3
replies
2.2k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 3.0 years ago by ▴ 40 • written 3.0 years ago by ▴ 10
2
votes
2
replies
1.3k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
3.0 years ago Sooni ▴ 10
4
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5
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6.9k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 3.0 years ago by 53k • written 3.1 years ago by ▴ 10
2
votes
5
replies
2.9k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
3.2 years ago Katharina • 0
0
votes
1
reply
4.5k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 3.3 years ago by 43k • written 3.3 years ago by • 0
0
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3
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2.4k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
0
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1
reply
2.7k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 3.4 years ago by ▴ 290 • written 3.5 years ago by • 0
1
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1
reply
1.8k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
0
votes
2
replies
9.0k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
3.6 years ago Bhavana • 0
0
votes
3
replies
2.2k
views
Persisting error in making a heatmap
heatmaps gplots
3.6 years ago beslinail • 0
1
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1
reply
1.4k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.8 years ago by 68k • written 3.8 years ago by • 0
0
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1
reply
1.8k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 4.4 years ago by ▴ 40 • written 4.4 years ago by • 0
0
votes
2
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2.5k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
4.7 years ago Clara ▴ 10
0
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1
reply
3.7k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by ▴ 10
1
vote
1
reply
1.5k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 30
4
votes
5
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2.2k
views
DEseq2 results
heatmaps DEGs PCA
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by • 0
0
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0
replies
1.1k
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 10
34 results • Page 1 of 1
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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0
the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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