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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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ATpoint
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Given that the annotation versions were the same the results *should* be identical, but for such a simple task as making a tx2gene why not …
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See
Phipson, B., Oshlack, A. DiffVar: a new method for detecting differential variability with application to methylation in cancer and …
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Michael Love
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Looking at differential variance across groups, where you regress out orthogonal nuisance factors from VST data, seems correct and would po…
Answer: Installation error for Rsamtools.
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James W. MacDonald
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It's already installed. Note the warning:
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Warning message:
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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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Nicholas
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Just an update on this: I tried ```tximport``` with ```tx2gene``` objects from the three annotation packages and from the GTF file itself. …
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