Bioconductor RNASEQ

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DESeq2 RNAseq

updated 1 day ago by Michael Love 41k • written 2 days ago by kcarey • 0

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817

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clusterProfiler RNASeq

updated 2 days ago by Guangchuang Yu ★ 1.2k • written 13 months ago by ruiqi.li ▴ 10

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limma RNASeq voom

updated 3 days ago by Gordon Smyth 50k • written 3 days ago by taur.vil • 0

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158

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technicalReplicates BatchEffect limma RNASeq

7 days ago • updated 4 days ago catv • 0

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122

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limma edgeR RNASeq

updated 7 days ago by Gordon Smyth 50k • written 8 days ago by Shaimaa Gamal • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 8 days ago by Michael Love 41k • written 8 days ago by 09191919 • 0

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890

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SingleCell RNASeq RNASeqData scRNAseq

updated 9 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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122

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scRNAseq RNAseq

updated 16 days ago by ATpoint ★ 4.0k • written 18 days ago by Merav • 0

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 24 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

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690

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biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

10 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

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