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Comment: Slightly different count plots from R and spreadsheet
by
Michael Love
42k
Change timepoint to an integer in the data frame:
```
as.numeric(as.character( <factor> ))
```
Then it should make points instead of boxe…
Answer: WGNCA kME vs. kIM
by
Vitor
•
0
You can compare kIM and kME within module assignments. The plot below is for my network (I used Pearson correlation and signed network).
…
Comment: ChAMP installation issue
by
James W. MacDonald
66k
If you have beta values, try the `DSS` package. An alternative is to compute the logit transform (to M-values), which are amenable to analy…
Answer: pathview error
by
James W. MacDonald
66k
The obvious would be to check that you have genes that map to that pathway. It's unusual to have so many NA values for your NCBI gene IDs, …
Comment: ChAMP installation issue
by
Tahirah
•
0
Thanks a lot. But unfortunately it didn't work. I guess I will have to wait until ChAMP becomes available for version 3.19
In the meantime …
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