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RNAseq_Analysis
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limma - Multi-level Experiments - time course data
limma
limma voom
rnaseq_analysis
DEG
6.1 years ago • updated 5.2 years ago
SPbeginner
• 0
1
vote
3
replies
1.3k
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Ortholog conversions of non-model organisms not present in Biomart, ensembl or KEGG
rnaseq_analysis
KEGG
nonmodel species
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
laural710
• 0
0
votes
0
replies
926
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Sequence composition effect
sequencing
rnaseq_analysis
6.3 years ago
alemutak
• 0
1
vote
3
replies
1.4k
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RNASeq data analysis with bio replicates
rnaseq_analysis
7.0 years ago
fakhter1
• 0
1
vote
1
reply
1.1k
views
How to simulate count data to test rnaseq analysis code?
rnaseq_analysis
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
kjo
▴ 70
3
votes
3
replies
4.4k
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How to do a confounding variable adjustment without using the treatment information?
deseq2
rnaseq_analysis
variancestabilizingtransformation
confounders
updated 8.0 years ago by
Michael Love
42k • written 8.0 years ago by
ompandey
▴ 10
1
vote
2
replies
1.8k
views
Limma model fitting: including and excluding replicates in the model gives different results in RNAseq Analysis
limma
RNAseq_Analysis
model.matrix
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
anver
• 0
7 results • Page
1 of 1
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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