Showing : confounders • reset
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comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 17 months ago by ▴ 260 • written 17 months ago by ▴ 10
2
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6
replies
808
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Building a biologically meaningful design matrix for limma/voom in a large RNASeq experiment
limma limma-voom limma design matrix confounders
updated 3.0 years ago by ★ 26k • written 3.0 years ago by ▴ 10
1
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1
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520
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DESeq2 confounding cartridge
deseq2 confounders nanostring rnaseq differential gene expression
updated 3.2 years ago by 33k • written 3.2 years ago by • 0
0
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1
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1.2k
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RUVseq: How to implement to more complex time-course model?
ruvseq deseq2 model.matrix confounders
updated 3.9 years ago by ▴ 870 • written 3.9 years ago by • 0
0
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7
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1.1k
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DESeq2: how to identify confounding variable in the design matrix
deseq2 confounders design matrix rnaseq
4.2 years ago • updated 4.1 years ago lina.faller • 0
0
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3
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963
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Controlling for confounding variables in bumphunter
minfi bumphunter confounders
updated 4.2 years ago by 57k • written 4.2 years ago by • 0
2
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11
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927
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Adjusting for confounders along with paired testing using edgeR
edgeR paired samples confounders model.matrix
updated 5.0 years ago by 7.6k • written 5.0 years ago by ▴ 30
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3
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2.2k
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How to do a confounding variable adjustment without using the treatment information?
deseq2 rnaseq_analysis variancestabilizingtransformation confounders
updated 5.1 years ago by 33k • written 5.1 years ago by • 0
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5
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how to design a formula in DEseq2 that control for the effect of putative confounders?
Deseq2 dds confounders
updated 5.5 years ago by 33k • written 5.5 years ago by ▴ 30
9 results • Page 1 of 1
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Comment: pathview: unable to use option "out.suffix" by 文祥 • 0
Add coment about sessionInfo R version 4.1.0 (2021-05-18) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur 10.16 …
Comment: To retrieve the transcript from gff file with the longest isoform by Aneesha • 0
Okay, Thank You
Comment: how to plot multiple RLEs on same plot? by xiaofeiwang18266 ▴ 20
Thanks a lot!
Answer: Data input for aracne2regulon function in viper package by reef103 • 0
Hi @luna_p , I'm sorry I didn;t see this before. The error might be due to a lack of match between the genes in the network (regulators and…
Comment: deseq2 normalized data with heatmap by Kevin Blighe 3.1k
Hey Ian, specifically just for the heatmap and/or the clustering, we can additionally scale and center the `vsd` or `rld` data. The `scale…
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Answer: Difference in mixed test for fry vs mroast
A: DESeq2 variance transformation error and plot dispersion Estimate
Error in DESeqDataSet : some values in assay are not integers
A: Error in DESeqDataSet : some values in assay are not integers
A: Error in DESeqDataSet : some values in assay are not integers
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