Bioconductor Rnaseq

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limma limma voom rnaseq_analysis DEG

5.7 years ago • updated 4.7 years ago SPbeginner • 0

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1.1k

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rnaseq_analysis KEGG nonmodel species

updated 5.2 years ago by James W. MacDonald 64k • written 5.2 years ago by laural710 • 0

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815

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sequencing rnaseq_analysis

5.9 years ago alemutak • 0

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1.2k

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rnaseq_analysis

6.5 years ago fakhter1 • 0

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977

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rnaseq_analysis

updated 7.2 years ago by Gordon Smyth 48k • written 7.2 years ago by kjo ▴ 60

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4.0k

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deseq2 rnaseq_analysis variancestabilizingtransformation confounders

updated 7.5 years ago by Michael Love 41k • written 7.5 years ago by ompandey ▴ 10

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limma RNAseq_Analysis model.matrix

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by anver • 0

7 results • Page 1 of 1

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Comment: Result from GSEA for non-model organism not as expected by James W. MacDonald 64k

I asked you in a previous thread to **not add comments to old threads** and instead start a new one. Please follow that advice. It's fine i…

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by James W. MacDonald 64k

This is something you should be able to work out on your own. When you get an error, you have to read it and try to figure out what it mean…

Comment: Subtracting INPUT reads from ChIP read counts. by ann-sophie.gironne • 0

Hi Rory! I'm trying to scale my bigwig files so the visualization on IGV matches what the DiffBind analysis results, being that the sample…

Comment: Ensembl down??? by James W. MacDonald 64k

Yup, they seem to be down. What exactly are you trying to do? There may be other options.

Answer: Result from GSEA for non-model organism not as expected by Aastha Kapoor • 0

I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…

Votes

Comment: Ensembl down???

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

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Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k