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3.0 years ago • updated 2.9 years ago
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3.1 years ago
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11 months ago
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12 months ago • updated 11 months ago
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12 months ago • updated 11 months ago
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12 months ago • updated 11 months ago
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12 months ago • updated 11 months ago
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10 weeks ago • updated 9 weeks ago
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6 weeks ago • updated 1 day ago
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Recent ...
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Comment: Help with running egsea()
by
Chris
•
0
I tried egsea.ma and got this error:
gsa = egsea.ma(fit2, vector_group, probe_annotation, contrasts = contrast_matrix, gs.annots = gs.…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
•
0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
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Gordon Smyth
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sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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James W. MacDonald
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I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
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James W. MacDonald
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If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
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