Showing : Residuals • reset
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Extract residuals from DESeq2 fit
deseq2 residuals
updated 2.1 years ago by 34k • written 2.1 years ago by • 0
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866
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Data format after removing batch effects using linear model vs using comBat
microarray SVA ComBat Linear models Residuals
4.1 years ago DataFanatic • 0
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DESeq2 residuals log transformation input for WGCNA
deseq2 residuals wgcna
updated 4.5 years ago by 13k • written 4.5 years ago by • 0
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matrix of residuals from limma, with and without the phenotype of interest
limma residuals
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 10
4 results • Page 1 of 1
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Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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