Bioconductor Linear models

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518

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deseq2 design matrix multi-confounders linear models rna-seq

updated 3.2 years ago by Michael Love 40k • written 3.2 years ago by mohamedrefaat.1.1992 • 0

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614

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methylation ComBat Linear models batch correction AIC

updated 3.5 years ago by Kevin Blighe 3.8k • written 3.5 years ago by lucasmiranda42 • 0

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530

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Limma R Linear Models

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by christiangriffioen • 0

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657

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ballgown linear models

5.1 years ago Yong Li ▴ 50

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1.1k

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microarray SVA ComBat Linear models Residuals

5.8 years ago DataFanatic ▴ 10

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Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k

Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…

Comment: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k

Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

Sure, noted.

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …

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WGCNA with paired samples

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