Showing : Linear models • reset
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DESeq2 accounting for two confounders with interaction in the design matrix
deseq2 design matrix multi-confounders linear models rna-seq
updated 18 months ago by 34k • written 18 months ago by • 0
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Batch correction in Linear Models for methylation data
methylation ComBat Linear models batch correction AIC
updated 21 months ago by 3.4k • written 21 months ago by • 0
2
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What is the "linear model" part used for in Limma?
Limma R Linear Models
updated 2.6 years ago by ★ 27k • written 2.6 years ago by • 0
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Model problem using ballgown
ballgown linear models
3.4 years ago Yong Li ▴ 50
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Data format after removing batch effects using linear model vs using comBat
microarray SVA ComBat Linear models Residuals
4.1 years ago DataFanatic • 0
5 results • Page 1 of 1
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Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k
Cross posted to Biostars https://www.biostars.org/p/9490039/
Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k
The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…
Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k
The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.
Comment: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k
The error you get from `ComBat` comes from the test ``` qr(design)$rank < ncol(design) ``` And inside of `nonEstimable` is, as one might …
Comment: Understanding output of Negative Binomial in DESeq2 by swbarnes2 ▴ 850
Cross posted at Biostars: https://www.biostars.org/p/9490151/
Votes
Answer: Effect size using likelihood ratio test in DESeq2
Comment: ggtree install
Answer: Warning messages on Apple M1 BigSur
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
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