Bioconductor Rhdf5lib

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rhdf5 Rhdf5lib kallisto tximport

2.8 years ago Yijing • 0

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rhdf5 Rhdf5lib

4.5 years ago charlotte ▴ 10

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rhdf5 rhdf5filters Rhdf5lib

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rhdf5 rhdf5filters Rhdf5lib

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Rhdf5lib rhdf5

5.0 years ago • updated 2.5 years ago Thomas Sandmann ▴ 90

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minfi Rhdf5lib

updated 5.1 years ago by Mike Smith ★ 6.6k • written 5.1 years ago by Giovanni Calice ▴ 160

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software error Rhdf5lib

6.8 years ago z.navidi90 ▴ 10

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

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Answer: Subsetting data verses contrasts [DESeq2]?

A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

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Popular Question to Peter Hickey ▴ 760