Bioconductor Rhdf5lib

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rhdf5 Rhdf5lib kallisto tximport

2.7 years ago Yijing • 0

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rhdf5 Rhdf5lib

4.5 years ago • updated 4.4 years ago charlotte ▴ 10

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rhdf5 rhdf5filters Rhdf5lib

4.5 years ago • updated 4.4 years ago charlotte ▴ 10

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rhdf5 rhdf5filters Rhdf5lib

4.5 years ago charlotte ▴ 10

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Rhdf5lib rhdf5

4.9 years ago • updated 2.4 years ago Thomas Sandmann ▴ 90

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minfi Rhdf5lib

updated 5.0 years ago by Mike Smith ★ 6.6k • written 5.0 years ago by Giovanni Calice ▴ 160

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software error Rhdf5lib

6.7 years ago z.navidi90 ▴ 10

7 results • Page 1 of 1

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Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …

Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 10

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Votes

Answer: Clarification on counting in Rsubread (featureCounts)

C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results

A: Conversion from counts to FPKM

Answer: Incosistencies in buildSNNGraph() function

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