Showing : kallisto • reset
0
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107
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Pseudoalignment for repetitive sequences
Kallisto RNASeq pseudoaligners ShortTandemRepeats
updated 9 weeks ago by 58k • written 9 weeks ago by • 0
0
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2
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307
views
Why counts to tpm gives different values compared to tpm from kallisto?
rnaseq counts tpm GenomicFeatures kallisto
updated 10 months ago by 34k • written 10 months ago by • 0
1
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9
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835
views
Importing Kallisto counts with tximport
tximport Kallisto H5Fopen
updated 17 months ago by 34k • written 17 months ago by • 0
0
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2
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213
views
error in creating kallisto index
kallisto
updated 17 months ago by 34k • written 17 months ago by • 0
2
votes
4
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1.1k
views
tximport, Kallisto and Deseq2 (quick answer)
kallisto tximport deseq2 counts
2.4 years ago • updated 18 months ago Mozart ▴ 20
1
vote
1
reply
238
views
tximport errors with h5 and tsv files
tximport kallisto
updated 21 months ago by 34k • written 21 months ago by • 0
0
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6
replies
436
views
how to set offset matrix to Deseq2 differential analysis
deseq2 Kallisto tximport
updated 2.3 years ago by 34k • written 2.3 years ago by • 0
3
votes
1
reply
464
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Tximport and pseudo alignment with Kallisto
kallisto tximport deseq2
updated 2.3 years ago by 34k • written 2.3 years ago by ▴ 20
0
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4
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762
views
Error in H5Fopen with kallisto .h5 files
tximport kallisto rhdf5
2.5 years ago uso2015 • 0
1
vote
5
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1.3k
views
tximport error with kallisto .h5 files
deseq2 kallisto tximport
updated 2.7 years ago by 34k • written 2.7 years ago by • 0
2
votes
3
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615
views
tximport: kallisto .h5 files not recognized as such when they have a different name
tximport kallisto
updated 2.7 years ago by 43k • written 2.7 years ago by ▴ 40
6
votes
6
replies
891
views
Kallisto output with DEXSeq
dexseq kallisto NH_tag
updated 3.0 years ago by ★ 1.8k • written 3.0 years ago by • 0
1
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4
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1.5k
views
If transcript-to-gene conversion is needed in kallisto > tximport > DESeq2 pipeline
deseq2 rnaseq kallisto tximport
updated 3.5 years ago by 34k • written 3.5 years ago by • 0
0
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1
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601
views
Error with tximport on Kallisto .h5 data.
tximport kallisto bioconductor rnaseq
3.7 years ago srdjan.kasapovic0 • 0
2
votes
4
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1.4k
views
tximport of kallisto files
tximport deseq2 kallisto
updated 3.8 years ago by 34k • written 3.8 years ago by • 0
0
votes
0
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483
views
IsoformSwitchAnalyzeR error input
kallisto differential isoform usage isoform
3.9 years ago ilyco • 0
3
votes
3
replies
772
views
Kallisto with tximport gives different results with asymmetrical experimental design
kallisto deseq2 tximport
updated 3.9 years ago by 34k • written 3.9 years ago by ▴ 20
0
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1
reply
554
views
Importing kallisto's abundance files into DESeq2 pipeline
deseq2 kallisto
updated 4.0 years ago by 34k • written 4.0 years ago by ▴ 10
2
votes
2
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1.2k
views
tximport error: TXNAME from Txdb.mm10 and kallisto target_id mismatch
tximport kallisto txdb.mmusculus.ucsc.mm10.knowngene
updated 4.3 years ago by 58k • written 4.3 years ago by • 0
0
votes
3
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1.5k
views
(very) conflicting results with DESeq2 between versions
deseq2 tximport rnaseq kallisto R
updated 4.3 years ago by 34k • written 4.3 years ago by • 0
0
votes
4
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1.3k
views
Error reading kallisto files using tximport for cross species RNA-Seq analysis
kallisto tximport RNA-Seq across species
updated 4.3 years ago by 34k • written 4.3 years ago by ▴ 40
2
votes
5
replies
2.3k
views
unable to get tximport to work on data from kallisto
tximport kallisto
updated 4.4 years ago by 13k • written 4.4 years ago by ▴ 10
9
votes
11
replies
4.1k
views
Using 'tximport' library for downstream DGE after quantifying with Kallisto
tximport Kallisto rna-seq
updated 4.6 years ago by ▴ 20 • written 5.4 years ago by ▴ 10
0
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13
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7.1k
views
Count matrix from Kallisto as input for DESeq2
rnaseq deseq2 kallisto
5.0 years ago yjliu1127 • 0
24 results • Page 1 of 1
Recent ...
Replies
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Comment: Macbook M1 install genefilter failed by Michael Love 34k
What happens when you do ``` library(DESeq2) ``` If it says something about genefilter, then just try to install genefilter, not DESeq2 a…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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Teacher to Vincent J. Carey, Jr. 6.5k
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Scholar to jbnrodriguez • 0
Scholar to Yang Liao ▴ 260
Scholar to James W. MacDonald 58k
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