Bioconductor RnaSeq

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114

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DESeq2 RNAseq

updated 5 days ago by Michael Love 41k • written 5 days ago by kcarey • 0

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120

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limma RNASeq voom

updated 7 days ago by Gordon Smyth 50k • written 7 days ago by taur.vil • 0

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181

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technicalReplicates BatchEffect limma RNASeq

10 days ago • updated 8 days ago catv • 0

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150

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limma edgeR RNASeq

updated 11 days ago by Gordon Smyth 50k • written 12 days ago by Shaimaa Gamal • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 11 days ago by Michael Love 41k • written 12 days ago by 09191919 • 0

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127

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scRNAseq RNAseq

updated 20 days ago by ATpoint ★ 4.1k • written 21 days ago by Merav • 0

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833

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clusterProfiler RNASeq

updated 6 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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898

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SingleCell RNASeq RNASeqData scRNAseq

updated 12 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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1.6k

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sgseq rnaseq

updated 1 day ago by Sara • 0 • written 6.7 years ago by Sylvain Foisy ▴ 80

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 28 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

10 results • Page 1 of 1

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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k

Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…

Answer: Fold change calculation in Diffbind vs. DESEQ2? by Michael Love 41k

There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.

Answer: Timecourse RNASeq analysis by Michael Love 41k

There are many choices for time course, and we have an example in our workflow (rnaseqGene). Otherwise, I recommend to consult a local …

Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar by Michael Love 41k

You can either turn off independent filtering in `results` or use `ihw` see the vignette.

Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Thanks Gordon for a detail guide! You have a great memory of time. GSVA also do differential express at pathway level (https://bioconductor…

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Comment: Why p value inconsistent when using different number of pathway score?

Nominations for Bioconductor Awards 2024!

Answer: Improving the design matrices vignette in RNAseq123

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha

Awards • All

Commentator to Leonard Goldstein ▴ 200