Bioconductor RnaSeq

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1.7k

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sgseq rnaseq

updated 13 hours ago by Leonard Goldstein ▴ 200 • written 6.7 years ago by Sylvain Foisy ▴ 80

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 29 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

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843

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clusterProfiler RNASeq

updated 7 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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903

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SingleCell RNASeq RNASeqData scRNAseq

updated 13 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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190

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technicalReplicates BatchEffect limma RNASeq

12 days ago • updated 9 days ago catv • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 13 days ago by Michael Love 41k • written 13 days ago by 09191919 • 0

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154

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limma edgeR RNASeq

updated 12 days ago by Gordon Smyth 50k • written 13 days ago by Shaimaa Gamal • 0

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128

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limma RNASeq voom

updated 8 days ago by Gordon Smyth 50k • written 8 days ago by taur.vil • 0

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121

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DESeq2 RNAseq

updated 6 days ago by Michael Love 41k • written 6 days ago by kcarey • 0

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131

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scRNAseq RNAseq

updated 21 days ago by ATpoint ★ 4.1k • written 23 days ago by Merav • 0

10 results • Page 1 of 1

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Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…

Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by James W. MacDonald 65k

You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…

Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Votes

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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