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Comment: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
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It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
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efoss
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I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
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Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
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Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
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