Bioconductor SANTA

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limma SANTA

14.7 years ago • updated 4.9 years ago Gordon Smyth 50k

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Microarray SANTA Microarray SANTA

20.5 years ago VanLieu, Connie ▴ 10

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1.1k

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plier SANTA plier SANTA

updated 19.6 years ago by Francois Collin ▴ 50 • written 19.6 years ago by Lelivelt, Mike ▴ 50

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SANTA SANTA

updated 19.4 years ago by Harry Mangalam ▴ 60 • written 19.4 years ago by Lelivelt, Mike ▴ 50

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Microarray Genetics Classification SANTA Microarray Genetics Classification SANTA

19.1 years ago Higgs, Debi ▴ 10

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Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes

12.6 years ago Claude Chelala ▴ 40

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ArrayExpress SANTA ArrayExpress SANTA

updated 15.3 years ago by Martin Morgan 25k • written 15.3 years ago by Yovanny Izquierdo Núñez ▴ 20

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Normalization probe limma SANTA Normalization probe limma SANTA

updated 14.9 years ago by Erika Melissari ▴ 250 • written 14.9 years ago by Francois Pepin ★ 1.3k

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Annotation limma SANTA Annotation limma SANTA

14.7 years ago Marcelo Laia ▴ 450

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Annotation limma SANTA Annotation limma SANTA

14.7 years ago Gordon Smyth 50k

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Microarray SANTA Microarray SANTA

14.7 years ago Marcelo Laia ▴ 450

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1.2k

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limma SANTA limma SANTA

updated 4.9 years ago by Gordon Smyth 50k • written 14.7 years ago by Marcelo Laia ▴ 450

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limma SANTA limma SANTA

14.7 years ago Naomi Altman ★ 6.0k

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Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA

updated 13.9 years ago by Ping Ma ▴ 10 • written 13.9 years ago by Hervé Pagès 16k

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RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA

12.7 years ago stefano iacus ▴ 430

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Microarray SANTA Microarray SANTA

12.1 years ago Ramiro Rodríguez ▴ 30

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graph limma SANTA graph limma SANTA

15.1 years ago Marcelo Laia ▴ 450

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SANTA SANTA

12.0 years ago mabawsa ▴ 20

18 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180