Showing : SANTA • reset
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limma technical replicates and biological replicates in same design
limma SANTA
16.4 years ago • updated 6.7 years ago Gordon Smyth 53k
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limma technical replicates and biological replicates in the same design
limma SANTA limma SANTA
updated 6.7 years ago by 53k • written 16.4 years ago by ▴ 450
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FOSBE 2012
SANTA SANTA
13.8 years ago mabawsa ▴ 20
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Selected probes from a given probeset
Microarray SANTA Microarray SANTA
13.8 years ago Ramiro Rodríguez ▴ 30
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Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
14.3 years ago Claude Chelala ▴ 40
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
14.5 years ago stefano iacus ▴ 430
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question on makeTranscriptDbFromUCSC
Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA
updated 15.7 years ago by ▴ 10 • written 15.7 years ago by 16k
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limma technical replicates and biological replicates in the same design
limma SANTA limma SANTA
16.4 years ago Naomi Altman ★ 6.0k
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Bioconductor Digest, Vol 79, Issue 20
Annotation limma SANTA Annotation limma SANTA
16.4 years ago Gordon Smyth 53k
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OFF TOPIC high-density SSU rRNA microarray
Microarray SANTA Microarray SANTA
16.4 years ago Marcelo Laia ▴ 450
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[limma] Possible bug on read.maimages function ?
Annotation limma SANTA Annotation limma SANTA
16.4 years ago Marcelo Laia ▴ 450
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1.5k
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help needed on avereps function
Normalization probe limma SANTA Normalization probe limma SANTA
updated 16.7 years ago by ▴ 250 • written 16.7 years ago by ★ 1.3k
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limma Time Course Experiments question
graph limma SANTA graph limma SANTA
16.9 years ago Marcelo Laia ▴ 450
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Expressionset from ArrayExpress processed data
ArrayExpress SANTA ArrayExpress SANTA
updated 17.1 years ago by 25k • written 17.1 years ago by ▴ 20
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Job: Statistical Analyst - Affymetrix, Inc.
Microarray Genetics Classification SANTA Microarray Genetics Classification SANTA
20.8 years ago Higgs, Debi ▴ 10
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Affymetrix file parsers released under LGPL open source license
SANTA SANTA
updated 21.2 years ago by ▴ 60 • written 21.2 years ago by ▴ 50
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PLIER is available as open source
plier SANTA plier SANTA
updated 21.4 years ago by ▴ 50 • written 21.4 years ago by ▴ 50
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Affymetrix Postdoctoral Opportunity
Microarray SANTA Microarray SANTA
22.2 years ago VanLieu, Connie ▴ 10
18 results • Page 1 of 1
Recent ...
Replies
Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0
the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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