Bioconductor SJava

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SJava RWebServices

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by yinghao • 0

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Cancer RWebServices SJava CoGAPS CRImage Rsubread Cancer RWebServices SJava CoGAPS

11.9 years ago Day, Roger S ▴ 60

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1.1k

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limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices

updated 13.1 years ago by Dan Tenenbaum ★ 8.2k • written 13.1 years ago by MLSC MANIPAL ▴ 120

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RWebServices SJava RWebServices SJava

updated 14.2 years ago by Martin Morgan 25k • written 14.2 years ago by Michael Dondrup ▴ 550

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RWebServices SJava RWebServices SJava

14.3 years ago Michael Dondrup ▴ 550

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limma convert ArrayExpress SJava limma convert ArrayExpress SJava

updated 14.6 years ago by Martin Morgan 25k • written 14.6 years ago by Chris Fjell ▴ 60

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1.1k

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RWebServices SJava RWebServices SJava

updated 15.4 years ago by Martin Morgan 25k • written 15.4 years ago by Bastian Angermann ▴ 70

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777

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RMAGEML SJava RMAGEML SJava

updated 18.2 years ago by Steffen Durinck ▴ 420 • written 18.2 years ago by Vincent Bloch ▴ 10

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877

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RMAGEML PROcess marray SJava RMAGEML PROcess marray SJava

updated 19.1 years ago by Sean Davis 21k • written 19.1 years ago by Vincent J. Carey, Jr. 6.7k

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871

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RMAGEML SJava RMAGEML SJava

19.1 years ago Vincent J. Carey, Jr. 6.7k

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699

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SJava SJava

19.1 years ago Sean Davis 21k

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609

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RMAGEML SJava RMAGEML SJava

19.2 years ago Steffen Durinck ▴ 420

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1.4k

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SJava SJava

updated 19.6 years ago by Steffen Durinck ▴ 420 • written 19.6 years ago by Dipl.-Ing. Johannes Rainer ▴ 430

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732

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GO affy SJava GO affy SJava

20.4 years ago Chad Shaw ▴ 80

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743

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SJava SJava

updated 21.6 years ago by rgentleman ★ 5.5k • written 21.6 years ago by Weijia Zhang ▴ 10

15 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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