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limma for gene expression analysis with big and unbalanced sample size
limma
microarray
statistics
updated 6 days ago by
XW
• 0 • written 7.9 years ago by
tati6406
• 0
25
votes
7
replies
11k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2
rnaseq
statistics
updated 7 months ago by
camillab.
▴ 10 • written 6.6 years ago by
Russ Fraser
▴ 30
1
vote
1
reply
366
views
Further analysis after limma regression output
statistics
Epigenetics
limma
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Jitendra
▴ 10
0
votes
1
reply
328
views
DEseq2 : Complex design with a mixture of male and female mice
statistics
DESeq2
updated 5 months ago by
Michael Love
41k • written 5 months ago by
lionel.spinelli
• 0
0
votes
0
replies
236
views
multipollutant models
statistics
Regression
r
limma
5 months ago
Jitendra
▴ 10
0
votes
0
replies
192
views
Job:
Statistics Lectureships at St Andrews
JobPosting
computational
statistics
10 weeks ago
Andy Lynch
▴ 120
6 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Answer: Help with running egsea()
by
James W. MacDonald
65k
There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…
Votes
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
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