Bioconductor SequencingData

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sequencing Sequencing SequencingData

21 months ago communication • 0

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1.4k

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edgeR SequencingData miRNA TMM Normalization

updated 3.0 years ago by Gordon Smyth 53k • written 3.0 years ago by tleona3 • 0

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Transcriptomics SequencingData

3.2 years ago Rom • 0

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1.2k

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SequencingData

4.3 years ago • updated 4.2 years ago adR ▴ 40

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1.8k

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SequencingData ATACSeq ATACseqQC

updated 3.4 years ago by Rory Stark ★ 5.2k • written 4.3 years ago by adR ▴ 40

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1.1k

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SequencingData STR MutationalPatterns pedigree HapMap

4.5 years ago Negar • 0

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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening in a clean install

Comment: limpa analysis advice by Gordon Smyth 53k

Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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