Bioconductor SequencingData

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sequencing Sequencing SequencingData

6 months ago communication • 0

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1.0k

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edgeR SequencingData miRNA TMM Normalization

updated 21 months ago by Gordon Smyth 51k • written 21 months ago by tleona3 • 0

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701

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Transcriptomics SequencingData

23 months ago Rom • 0

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SequencingData

3.1 years ago • updated 3.0 years ago adR ▴ 40

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SequencingData ATACSeq ATACseqQC

updated 2.2 years ago by Rory Stark ★ 5.2k • written 3.1 years ago by adR ▴ 40

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800

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SequencingData STR MutationalPatterns pedigree HapMap

3.3 years ago Negar • 0

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Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Yes, I understand that the p-values are with respect to the full versus reduced model comparison. However, the "genes that cha…

Comment: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Agree. > for library size and the average transcript length, what additional components will dds <- DESeq(dds) continue to normalize? Will…

Comment: DESeq Input from Salmon + tximport/tximeta by ATpoint ★ 4.5k

> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

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Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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Popular Question to Assa Yeroslaviz ★ 1.5k