Bioconductor SequencingData

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sequencing Sequencing SequencingData

22 months ago communication • 0

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1.4k

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edgeR SequencingData miRNA TMM Normalization

updated 3.0 years ago by Gordon Smyth 53k • written 3.0 years ago by tleona3 • 0

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Transcriptomics SequencingData

3.2 years ago Rom • 0

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SequencingData

4.3 years ago adR ▴ 40

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1.9k

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SequencingData ATACSeq ATACseqQC

updated 3.5 years ago by Rory Stark ★ 5.3k • written 4.4 years ago by adR ▴ 40

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SequencingData STR MutationalPatterns pedigree HapMap

4.5 years ago Negar • 0

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Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160

This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…

Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

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Answer: Subsetting data verses contrasts [DESeq2]?

A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

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Popular Question to Peter Hickey ▴ 760