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SequencingData
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News:
Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing
Sequencing
SequencingData
19 months ago
communication
• 0
1
vote
1
reply
1.3k
views
Library sizes of miRNA sequencing data and TMM normalization with Edge-R
edgeR
SequencingData
miRNA
TMM
Normalization
updated 2.8 years ago by
Gordon Smyth
53k • written 2.8 years ago by
tleona3
• 0
0
votes
0
replies
997
views
Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics
SequencingData
3.0 years ago
Rom
• 0
0
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2
replies
1.2k
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R/Bioconductor package for Circulating Cell-Free DNA data analysis
SequencingData
4.1 years ago • updated 4.0 years ago
adR
▴ 40
0
votes
3
replies
1.8k
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package for ATACseq data analysis
SequencingData
ATACSeq
ATACseqQC
updated 3.3 years ago by
Rory Stark
★ 5.2k • written 4.1 years ago by
adR
▴ 40
0
votes
0
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1.1k
views
Do you know a sofware to draw pedigrees + haplotypes?
SequencingData
STR
MutationalPatterns
pedigree
HapMap
4.3 years ago
Negar
• 0
6 results • Page
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Comment: Generalized edgeR functions
by
Omar
• 0
[ragdoll hit](https://ragdollhitstickman.io/) That actually sounds like a reasonable approach, especially if the overlapping intervals repr…
Comment: upstream git branches of bioc-release
by
TrentonCollier99
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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