Bioconductor SequencingData

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507

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edgeR SequencingData miRNA TMM Normalization

updated 10 months ago by Gordon Smyth 49k • written 10 months ago by tleona3 • 0

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430

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Transcriptomics SequencingData

12 months ago Rom • 0

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631

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SequencingData

2.2 years ago • updated 2.1 years ago adR ▴ 30

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941

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SequencingData ATACSeq ATACseqQC

updated 15 months ago by Rory Stark ★ 5.1k • written 2.2 years ago by adR ▴ 30

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536

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SequencingData STR MutationalPatterns pedigree HapMap

2.4 years ago Negar • 0

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Answer: WGCNA documentation not available by James W. MacDonald 64k

Although people sometimes ask questions about WGCNA on this support site, it's not a Bioconductor package and therefore off-topic. Peter La…

Comment: ATACseqQC shiftGAlignmentsList() problem by Ou, Jianhong ★ 1.3k

try: `gal1 <- shiftGAlignmentsList(gal, outbam='3-AL1_Tn5_shift.bam')`. I will try to figure out why the memory is so high.

Comment: ATACseqQC shiftGAlignmentsList() problem by jfmay • 0

Thanks for your response. The version of ATACseqQC I'm using is 1.26.0. I tried to set bigFile=TRUE. The resulting object *gal1* still ends…

Answer: biomaRt_getBM_Failed to collect lazy table by James W. MacDonald 64k

That's an old bug that you should be able to fix by updating. I can't remember what package, although `db_collect` comes from `dbplyr` (and…

Comment: rDGIdb package inconsistency with web interface by christopherjamessteel1990 • 0

I went on https://www.dgidb.org/api and searched "RPS3A" and got the below result. Not sure how you got something different. There is certa…

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Answer: ScRNAseq analysis scran :: quickcluster Error

Comment: Ensembl down???

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and

Comment: Ensembl down???

Answer: SingleR annotation of several slots/patients

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