Bioconductor SequencingData

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sequencing Sequencing SequencingData

9 months ago communication • 0

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1.1k

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edgeR SequencingData miRNA TMM Normalization

updated 23 months ago by Gordon Smyth 52k • written 23 months ago by tleona3 • 0

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768

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Transcriptomics SequencingData

2.2 years ago Rom • 0

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996

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SequencingData

3.3 years ago • updated 3.2 years ago adR ▴ 40

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1.4k

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SequencingData ATACSeq ATACseqQC

updated 2.4 years ago by Rory Stark ★ 5.2k • written 3.3 years ago by adR ▴ 40

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838

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SequencingData STR MutationalPatterns pedigree HapMap

3.5 years ago Negar • 0

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Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by delhirussianescortscom • 0

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

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A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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