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HapMap
•
reset
0
votes
0
replies
651
views
Do you know a sofware to draw pedigrees + haplotypes?
SequencingData
STR
MutationalPatterns
pedigree
HapMap
2.7 years ago
Negar
• 0
0
votes
0
replies
841
views
Access HapMap from biomart
hapmap
8.3 years ago
jaganmutyala
• 0
2
votes
3
replies
5.1k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap
genomes
HapMap
genomes
9.8 years ago
enricoferrero
▴ 660
0
votes
2
replies
2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.3 years ago by
Valerie Obenchain
★ 6.8k • written 10.3 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.0k
views
Problem in reading SNP hapmap data
SNP
HapMap
SNP
HapMap
10.6 years ago
Xiaolian Yuan
▴ 30
0
votes
1
reply
1.6k
views
DiffBind & Chip-exo
HapMap
HapMap
10.8 years ago
Rory Stark
★ 5.2k
0
votes
0
replies
1.3k
views
the set of SNPs difference between Genome build 37.1 and 37.3
SNP
HapMap
SNP
HapMap
11.6 years ago
shirley zhang
★ 1.0k
0
votes
0
replies
873
views
How to make Illumina cluster files from HapMap
HapMap
HapMap
11.9 years ago
JiangZhengyu
▴ 40
0
votes
1
reply
1.3k
views
Help for snpMatrix
HapMap
HapMap
updated 12.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.2 years ago by
MLSC MANIPAL
▴ 120
0
votes
0
replies
903
views
Help to access hapmap using biomart
HapMap
biomaRt
HapMap
biomaRt
12.2 years ago
MLSC MANIPAL
▴ 120
0
votes
0
replies
2.7k
views
Limma - RNA-Seq DE genes - Quantile normalized log transformed RPKM data
HapMap
limma
HapMap
limma
12.4 years ago
Gordon Smyth
50k
0
votes
1
reply
1.5k
views
biomaRt and HapMap
SNP
HapMap
biomaRt
SNP
HapMap
biomaRt
updated 12.8 years ago by
Steffen Durinck
▴ 540 • written 12.8 years ago by
Deidre
▴ 10
0
votes
0
replies
1.2k
views
Illumina CanineHD CNV & crlmm?
GO
HapMap
cdf
affy
crlmm
GO
HapMap
cdf
affy
crlmm
13.4 years ago
Matthew Ritchie
▴ 1000
0
votes
8
replies
1.8k
views
mouse SNPs
SNP
Annotation
GO
HapMap
annotate
SNP
Annotation
GO
HapMap
annotate
13.6 years ago
Glazko, Galina
▴ 350
0
votes
3
replies
1.2k
views
HapMap gene list
GO
HapMap
GO
HapMap
updated 13.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 13.7 years ago by
noxyport@gmail.com
▴ 20
0
votes
2
replies
1.2k
views
error from rsamtools on 1000 genomes
Cancer
HapMap
Rsamtools
genomes
Cancer
HapMap
Rsamtools
genomes
updated 13.8 years ago by
Martin Morgan
25k • written 13.8 years ago by
Sergii Ivakhno
▴ 100
0
votes
3
replies
1.1k
views
smlSet
SNP
HapMap
GGtools
SNP
HapMap
GGtools
updated 14.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.1 years ago by
claire pujoll
▴ 30
0
votes
2
replies
1.2k
views
Strange output in GenABEL convert.snp.ped()
SNP
HapMap
SNP
HapMap
updated 14.2 years ago by
Martin Morgan
25k • written 14.2 years ago by
Paul Geeleher
★ 1.3k
0
votes
0
replies
724
views
Hapmap miRNA expression data
miRNA
HapMap
ArrayExpress
miRNA
HapMap
ArrayExpress
14.4 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
1.4k
views
SNPs in High Linkage Disequilibrium
SNP
HapMap
SNP
HapMap
14.8 years ago
palermogp@libero.it
▴ 10
0
votes
3
replies
1.3k
views
Problem with justSNPRMA, library "oligo"
SNP
HapMap
SNP
HapMap
15.2 years ago
alessio boattini
▴ 30
0
votes
2
replies
1.2k
views
Problems with oligo and pd.genomewidesnp.6
SNP
Annotation
HapMap
SNP
Annotation
HapMap
updated 15.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.9 years ago by
Jeremy Silver
▴ 10
0
votes
1
reply
1.0k
views
connect to HapMart with biomaRt
HapMap
biomaRt
HapMap
biomaRt
updated 15.9 years ago by
Steffen
▴ 500 • written 15.9 years ago by
Richard Pearson
▴ 390
0
votes
0
replies
968
views
connect to HapMart with biomaRt
HapMap
biomaRt
HapMap
biomaRt
17.2 years ago
Steffen Durinck
▴ 580
24 results • Page
1 of 1
Recent ...
Replies
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Votes
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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JKim
• 0
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Gordon Smyth
50k
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Chris
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Jonathan
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