Bioconductor SingleCellWorkflow

Showing : SingleCellWorkflow • reset

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SingleCellExperiment SingleCell SingleCellWorkflow SingleCellData

3 days ago Ludwig Geistlinger ▴ 70

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single-cell SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData

3 months ago Konstantinos Yeles ▴ 90

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SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData

updated 5 weeks ago by Partly • 0 • written 3.0 years ago by k1m ▴ 20

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SingleCell SingleCellData SingleCellWorkflow SingleCellExperiment

3.0 years ago Romina • 0

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SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST

3.2 years ago Nik Tuzov ▴ 90

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SingleCellSignalR SingleCellWorkflow SingleR

updated 21 months ago by Assa Yeroslaviz ★ 1.5k • written 4.3 years ago by FantasticAI ▴ 10

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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Popular Question to Robert Castelo ★ 3.4k