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SingleCellWorkflow
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How to detect LacZ tagged cells from single cell
SingleCell
SingleCellExperiment
SingleCellWorkflow
SingleCellData
2.3 years ago
k1m
▴ 20
2
votes
4
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1.2k
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Summary of library size factor is all equal to one
SingleCell
SingleCellData
SingleCellWorkflow
SingleCellExperiment
2.3 years ago
Romina
• 0
0
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0
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867
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Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow
DifferentialExpression
SingleCell
SingleCellMultiModal
MAST
2.5 years ago
Nik Tuzov
▴ 90
2
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2
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3.2k
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After having the output from SingleR for cell type annotation, what's the next step to assign the cell type to each cluster
SingleCellSignalR
SingleCellWorkflow
SingleR
updated 13 months ago by
Assa Yeroslaviz
★ 1.5k • written 3.6 years ago by
FantasticAI
▴ 10
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Answer: Limma - using both array and spot weights in lmFit
by
Gordon Smyth
52k
Was answered here: https://support.bioconductor.org/p/17028/
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
daldabrown9
• 0
For more info visit us on [R350 status check][1] [1]: https://sassagrantstatuscheck.co.za/
Answer: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
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FeatureCounts Output Counts at Exon Level Using Default Settings, want gene level
Answer: FeatureCounts Output Counts at Exon Level Using Default Settings, want gene leve
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
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