Bioconductor SmallRNAData

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conditions replicates SmallRNAData DESeq2

updated 12 months ago by Kevin Blighe ★ 4.0k • written 13 months ago by samer ▴ 10

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RNASeqData DifferentialExpression SmallRNAData DESeq2

15 months ago Shihui • 0

2 results • Page 1 of 1

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Comment: Newbie Question - adding metadata to an analysis by James W. MacDonald 67k

You don't need to generate an `ExpressionSet`, as you already have a `GeneFeatureSet`, which extends `eSet` and is a better fit for what yo…

Comment: Newbie Question - adding metadata to an analysis by Bryan H • 0

Thanks for the documentation. I have most of it working, except for the most critical step - incorporating the new metadata with the datase…

Comment: Diffbind interpretation of data - fold change by Vera • 0

Thank you for confirming that the foldchange is log2

Comment: Diffbind interpretation of data - fold change by Vera • 0

This solved it!

Comment: Diffbind interpretation of data - fold change by Vera • 0

Perfect! Thank you so much!

Votes

Answer: Annotation with org.Hs.eg.db Genome Build 38

Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool

A: goana limma- extract list of DE genes and genes in the enriched GO terms?

Answer: Package `not available for Bioconductor version '3.20'` when it should be

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