Bioconductor Conditions

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conditions replicates SmallRNAData DESeq2

updated 8 months ago by Kevin Blighe ★ 4.0k • written 9 months ago by samer ▴ 10

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conditions design DESeq2 Synergy

updated 2.7 years ago by Michael Love 42k • written 2.7 years ago by johannesdolberg • 0

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diffbind conditions edit

5.2 years ago inzirio ▴ 10

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cancer deseq2 edger CONDITIONS DBA

6.6 years ago arcucamila • 0

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Comment: How to read OSCA book? by zr • 0

Got it, that had really confused me a bit, thank you for your help!

Comment: How to use removeBatchEffect for removing effect of multiple confounding variabl by James W. MacDonald 67k

Please don't add questions onto a four-year old post. Instead, start a new one. If you want to reference the old post, that's fine.

Answer: How to use removeBatchEffect for removing effect of multiple confounding variabl by bioinformata • 0

Is it feasible to remove batch effect with limma after variance stabilizing transformation of the gene expression , or is eough to use vst…

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k

Hi Guido, It's that last filtering step. You are saying the NCBI Gene ID has to be unique AND the ontology has to be BP, which isn't what …

Comment: AffylmGUI does not start wit R 4.4.1 by richardallenfriedmanbrooklyn ▴ 20

Gordon, I found out what went wrong. The problem was that the xquartz distribution for mac from cran did not include tcltk! I found that b…

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Answer: How to read OSCA book?

DESeq2 design and contrasts with 2 drug-treated and one control group

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th

Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus

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