Showing : replicates • reset
2
votes
2
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226
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How to perform DEseq2 on datasets without replicates or merged replicates
deseq2 R bioconductor RNA_Seq replicates
updated 22 months ago by ▴ 850 • written 22 months ago by ▴ 20
3
votes
2
replies
379
views
Variation between technical replicates (DESeq2, batch effects)
rnaseq deseq2 differential expression batch effect replicates
updated 2.0 years ago by 34k • written 2.0 years ago by ▴ 10
2
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3
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2.2k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 2.5 years ago by 34k • written 2.5 years ago by • 0
1
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2
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1.5k
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Limma: technical and biological replicates in proteomics data
limma proteomics replicates
updated 3.2 years ago by ★ 27k • written 3.2 years ago by • 0
4
votes
4
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1.0k
views
Using duplicateCorrelation to handle replicate samples
limma duplicatecorrelation replicates
4.4 years ago rwalke13 • 0
3
votes
2
replies
1.1k
views
Uneven group sizes
deseq2 replicates
updated 4.7 years ago by 34k • written 4.7 years ago by ▴ 20
2
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10
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3.6k
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DESEQ2 with 3 biological replicates for control and 1 biological replicate for treatment
DESEQ deseq2 deseq replicates biologicalreplicates
5.8 years ago wd ▴ 30
0
votes
1
reply
698
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RnBeads and technical replicates in differential analysis
rnbeads replicates
updated 5.9 years ago by • 0 • written 5.9 years ago by ▴ 40
0
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0
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623
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dexseq without replicates
replicates
6.1 years ago efratdahan21 • 0
2
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5
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1.7k
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RNA-Seq analysis edgeR
edgeR rna-seq replicates
updated 6.6 years ago by 58k • written 6.6 years ago by • 0
10 results • Page 1 of 1
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Replies
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
EDIT: Ignore this, re-read the warning message in more detail (belatedly). I am now moving the cache. Thanks for the reply, I have since u…
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Michael Love 34k
See the tidy argument details.
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Ghida • 0
Hi Michael love, I am having the same problem. I made sure that my counts data is matrix and that the number of rows in the metadata is e…
Comment: How similar or disimilar are two sets of DEG? by ATpoint ▴ 850
Sounds like a job for gene set enrichment analysis, e.g. via http://bioconductor.org/packages/release/bioc/html/fgsea.html That will check…
Comment: Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dat by IIart.hubII • 0
What is "coad_clear" in this case? What data have you allotted to it? Can you please share the whole code? Or can anyone answer this questi…
Votes
A: Differential expression of RNA-seq data using limma and voom()
A: Differential expression analysis starting from TPM data
Comment: deseq2 machine sizing best practices for very large data set
Comment: Extracting normalized counts in MEDIPS
Comment: "full model matrix is less than full rank"
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