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replicates
•
reset
2
votes
2
replies
399
views
How to perform DEseq2 on datasets without replicates or merged replicates
deseq2
R
bioconductor
RNA_Seq
replicates
updated 2.7 years ago by
swbarnes2
★ 1.1k • written 2.7 years ago by
aishu.jp
▴ 20
3
votes
2
replies
716
views
Variation between technical replicates (DESeq2, batch effects)
rnaseq
deseq2
differential expression
batch effect
replicates
updated 2.9 years ago by
Michael Love
37k • written 2.9 years ago by
Nik dAK
▴ 10
2
votes
3
replies
2.6k
views
DESeq2- preliminary study no replicates
deseq2
replicates
error
DESeqDataSetFromMatrix
updated 3.4 years ago by
Michael Love
37k • written 3.4 years ago by
Yonatan Amzaleg
• 0
1
vote
2
replies
1.8k
views
Limma: technical and biological replicates in proteomics data
limma
proteomics
replicates
updated 4.0 years ago by
Aaron Lun
★ 27k • written 4.0 years ago by
ivansilbern
• 0
4
votes
4
replies
1.3k
views
Using duplicateCorrelation to handle replicate samples
limma
duplicatecorrelation
replicates
5.3 years ago
rwalke13
• 0
3
votes
2
replies
1.2k
views
Uneven group sizes
deseq2
replicates
updated 5.6 years ago by
Michael Love
37k • written 5.6 years ago by
le2336
▴ 20
2
votes
10
replies
4.0k
views
DESEQ2 with 3 biological replicates for control and 1 biological replicate for treatment
DESEQ
deseq2
deseq
replicates
biologicalreplicates
6.7 years ago
wd
▴ 30
0
votes
1
reply
839
views
RnBeads and technical replicates in differential analysis
rnbeads
replicates
updated 6.7 years ago by
rnbeads
• 0 • written 6.8 years ago by
Jon Manning
▴ 40
0
votes
0
replies
701
views
dexseq without replicates
replicates
7.0 years ago
efratdahan21
• 0
2
votes
5
replies
1.9k
views
RNA-Seq analysis edgeR
edgeR
rna-seq
replicates
updated 7.5 years ago by
James W. MacDonald
60k • written 7.5 years ago by
eb0906
• 0
10 results • Page
1 of 1
Recent ...
Replies
Comment: DEXseq error unable to find an inherited method for function NSBS for signature
by
ta_awwad
▴ 10
Hi there, did you manage to solve this problem? thanks TA
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl. …
Answer: Correlation between two different datasets: between results of RNAseq and absenc
by
Michael Love
37k
Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…
Answer: Strange Dispersion plot
by
Michael Love
37k
This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…
Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat
by
Michael Love
37k
In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…
Votes
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Answer: the difference between getGEO and getGEOSuppFiles
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