Showing : replicates • reset
2
votes
2
replies
399
views
How to perform DEseq2 on datasets without replicates or merged replicates
deseq2 R bioconductor RNA_Seq replicates
updated 2.7 years ago by ★ 1.1k • written 2.7 years ago by ▴ 20
3
votes
2
replies
716
views
Variation between technical replicates (DESeq2, batch effects)
rnaseq deseq2 differential expression batch effect replicates
updated 2.9 years ago by 37k • written 2.9 years ago by ▴ 10
2
votes
3
replies
2.6k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 3.4 years ago by 37k • written 3.4 years ago by • 0
1
vote
2
replies
1.8k
views
Limma: technical and biological replicates in proteomics data
limma proteomics replicates
updated 4.0 years ago by ★ 27k • written 4.0 years ago by • 0
4
votes
4
replies
1.3k
views
Using duplicateCorrelation to handle replicate samples
limma duplicatecorrelation replicates
5.3 years ago rwalke13 • 0
3
votes
2
replies
1.2k
views
Uneven group sizes
deseq2 replicates
updated 5.6 years ago by 37k • written 5.6 years ago by ▴ 20
2
votes
10
replies
4.0k
views
DESEQ2 with 3 biological replicates for control and 1 biological replicate for treatment
DESEQ deseq2 deseq replicates biologicalreplicates
6.7 years ago wd ▴ 30
0
votes
1
reply
839
views
RnBeads and technical replicates in differential analysis
rnbeads replicates
updated 6.7 years ago by • 0 • written 6.8 years ago by ▴ 40
0
votes
0
replies
701
views
dexseq without replicates
replicates
7.0 years ago efratdahan21 • 0
2
votes
5
replies
1.9k
views
RNA-Seq analysis edgeR
edgeR rna-seq replicates
updated 7.5 years ago by 60k • written 7.5 years ago by • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: DEXseq error unable to find an inherited method for function NSBS for signature by ta_awwad ▴ 10
Hi there, did you manage to solve this problem? thanks TA
Comment: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 120
I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl. …
Answer: Correlation between two different datasets: between results of RNAseq and absenc by Michael Love 37k
Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…
Answer: Strange Dispersion plot by Michael Love 37k
This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…
Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat by Michael Love 37k
In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…
Votes
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Answer: the difference between getGEO and getGEOSuppFiles
Awards • All
Popular Question to ta_awwad ▴ 10
Scholar to k.vitting.seerup ▴ 120
Scholar to James W. MacDonald 60k
Popular Question to Matthew Ritchie ▴ 1000
Scholar to Thomas Carroll ▴ 410
Locations • All
Iraq, just now
India, just now
WEHI, Melbourne, Australia, 8 minutes ago
Wageningen University, Wageningen, the Netherlands, 9 minutes ago
Germany, 16 minutes ago
Traffic: 437 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6