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SpliceR
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2
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4
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2.1k
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Error in SpliceR and GTF file issue
SpliceR
Cuffdiff
updated 8.6 years ago by
deppt002
• 0 • written 8.9 years ago by
mfahim
• 0
1
vote
1
reply
1.4k
views
Running cufflinks for spliceR
Annotation
spliceR
Annotation
spliceR
updated 8.9 years ago by
k.vitting.seerup
▴ 120 • written 9.7 years ago by
hliang
▴ 20
1
vote
3
replies
1.7k
views
spliceR error with GTF cummeRbund input
splicer
cummerbund
updated 6.8 years ago by
lmanchon
• 0 • written 7.9 years ago by
weisbeal
▴ 10
1
vote
5
replies
1.7k
views
using BitSeq data as input for spliceR
bitseq
spliceR
9.0 years ago
elle
▴ 10
0
votes
1
reply
1.2k
views
results from spliceR
spliceR
updated 8.9 years ago by
k.vitting.seerup
▴ 120 • written 9.1 years ago by
knight2ni
• 0
0
votes
1
reply
1.4k
views
Extract sequences corresponding to TCONS IDs from spliceR
splicer
updated 6.3 years ago by
k.vitting.seerup
▴ 120 • written 6.3 years ago by
aditi
▴ 20
0
votes
1
reply
978
views
missing values (NA) in spliceR results
splicer
rnaseq
updated 8.9 years ago by
k.vitting.seerup
▴ 120 • written 9.6 years ago by
hliang
▴ 20
0
votes
0
replies
1.5k
views
Differential expression workflow for alternative splicing
dexseq
bitseq
spliceR
9.0 years ago
elle
▴ 10
0
votes
4
replies
1.6k
views
browserSession for Arabidopsis
rtracklayer
Granges
spliceR
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.8 years ago by
mfahim
• 0
9 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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tangming2005
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James W. MacDonald
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