Bioconductor Splicer

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1.8k

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splicer

updated 7.4 years ago by k.vitting.seerup ▴ 120 • written 7.4 years ago by aditi ▴ 20

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2.1k

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splicer cummerbund

updated 7.9 years ago by lmanchon • 0 • written 9.0 years ago by weisbeal ▴ 10

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2.3k

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SpliceR Cuffdiff

updated 9.7 years ago by deppt002 • 0 • written 9.9 years ago by mfahim • 0

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1.9k

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rtracklayer Granges spliceR

updated 9.8 years ago by Michael Lawrence ★ 11k • written 9.8 years ago by mfahim • 0

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1.2k

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splicer rnaseq

updated 10.0 years ago by k.vitting.seerup ▴ 120 • written 10.6 years ago by hliang ▴ 20

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1.7k

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Annotation spliceR Annotation spliceR

updated 10.0 years ago by k.vitting.seerup ▴ 120 • written 10.7 years ago by hliang ▴ 20

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1.4k

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spliceR

updated 10.0 years ago by k.vitting.seerup ▴ 120 • written 10.2 years ago by knight2ni • 0

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2.1k

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bitseq spliceR

10.1 years ago • updated 10.0 years ago elle ▴ 10

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1.7k

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dexseq bitseq spliceR

10.1 years ago elle ▴ 10

9 results • Page 1 of 1

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Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…

Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k

The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Votes

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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