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limma for gene expression analysis with big and unbalanced sample size
limma
microarray
statistics
updated 10 days ago by
XW
• 0 • written 7.9 years ago by
tati6406
• 0
25
votes
7
replies
11k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2
rnaseq
statistics
updated 7 months ago by
camillab.
▴ 10 • written 6.6 years ago by
Russ Fraser
▴ 30
1
vote
1
reply
369
views
Further analysis after limma regression output
statistics
Epigenetics
limma
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Jitendra
▴ 10
0
votes
1
reply
333
views
DEseq2 : Complex design with a mixture of male and female mice
statistics
DESeq2
updated 5 months ago by
Michael Love
42k • written 5 months ago by
lionel.spinelli
• 0
0
votes
0
replies
238
views
multipollutant models
statistics
Regression
r
limma
5 months ago
Jitendra
▴ 10
0
votes
0
replies
198
views
Job:
Statistics Lectureships at St Andrews
JobPosting
computational
statistics
11 weeks ago
Andy Lynch
▴ 120
6 results • Page
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Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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