Bioconductor TXT

Showing : TXT • reset

votes

replies

5.4k

views

EdgeR normalization fastq txt TMM

updated 2.6 years ago by Gordon Smyth 52k • written 9.1 years ago by hamidrezarazzaghian • 0

votes

replies

918

views

Affymetrix CEL TXT

updated 5.0 years ago by James W. MacDonald 67k • written 5.0 years ago by pbachali ▴ 50

vote

628

views

read.table TXT

updated 5.1 years ago by James W. MacDonald 67k • written 5.1 years ago by ekl • 0

votes

replies

1.1k

views

Annotation GEO TXT

updated 5.1 years ago by Sean Davis 21k • written 5.1 years ago by ekl • 0

votes

870

views

Files TXT

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by ekl • 0

votes

replies

2.3k

views

qPCRset object nondetects r package txt

updated 14 months ago by Nat.Nataren • 0 • written 6.9 years ago by s.m.may • 0

votes

replies

2.4k

views

r TXT codelink

9.4 years ago Agaz Hussain Wani ▴ 260

7 results • Page 1 of 1

Recent ...

Replies

Answer: nightmare to make custom txdb for genomes from ToxoDB by Hervé Pagès 16k

Is this for genome assembly TGA4? https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000006565.2/ If that's the case then: ``` library(t…

Answer: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Votes

A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

Awards • All

Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k