Bioconductor TimeSeriesExperiment

Showing : TimeSeriesExperiment • reset

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 6 months ago by jacorvar ▴ 40 • written 18 months ago by eraldagjika ▴ 20

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907

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Proteomics limma repeatedmeasures TimeSeriesExperiment

18 months ago proteome_AO • 0

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624

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DESeq2 TimeSeriesExperiment

updated 19 months ago by Michael Love 41k • written 19 months ago by Jason • 0

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771

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DESeq2 single-timeseries TimeSeriesExperiment

updated 19 months ago by Michael Love 41k • written 19 months ago by Jigyasa • 0

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637

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DESeq2 MultipleFactors TimeSeriesExperiment

updated 20 months ago by Michael Love 41k • written 20 months ago by Maria • 0

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795

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TimeSeriesExperiment RNASeq design DESeq2

updated 2.4 years ago by Michael Love 41k • written 2.4 years ago by Kesava • 0

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807

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TimeSeriesExperiment Regression top limma

updated 2.7 years ago by James W. MacDonald 65k • written 2.7 years ago by Eleni • 0

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LRT Design DESeq2 doseResponse TimeSeriesExperiment

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by Mari • 0

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790

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TimeSeriesExperiment

updated 3.0 years ago by Michael Love 41k • written 3.0 years ago by curiousmind007 ▴ 10

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959

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QTL fourier TimeSeriesExperiment timecoursedata

3.0 years ago Daphne • 0

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Comment: Store output of matchPWM() by mat149 ▴ 70

out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) : '…

Answer: Store output of matchPWM() by James W. MacDonald 65k

Something like this? ``` ind <- as.logical(sapply(hitlist, length)) out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) …

Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…

Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by James W. MacDonald 65k

You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…

Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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