Bioconductor Import

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 19 months ago by jacorvar ▴ 40 • written 2.5 years ago by eraldagjika ▴ 20

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992

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.gpr raw Agilent MicroarrayData import

updated 3.5 years ago by Gordon Smyth 52k • written 3.5 years ago by irina.st.louis4 • 0

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1.8k

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import

3.8 years ago Ofelia • 0

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2.4k

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software error BigWig import windows

5.1 years ago lsilva.m • 0

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1.0k

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ddCt import analysis R qRTPCR

updated 5.7 years ago by Zhang, Jitao David ▴ 120 • written 5.7 years ago by mohammedtoufiq91 ▴ 10

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1.8k

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rtracklayer fasta import Biostrings

updated 6.3 years ago by Michael Lawrence ★ 11k • written 6.3 years ago by k.vitting.seerup ▴ 120

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3.8k

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bigwig rtracklayer import granges grangeslist

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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rtracklayer gff gtf import import.gff3

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by Marlin ▴ 20

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1.4k

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rtracklayer bigwig import

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by zx8754 ▴ 10

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2.9k

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rtracklayer import bed files

9.1 years ago jmr • 0

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3.2k

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rtracklayer import bed

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by Peter Hickey ▴ 750

11 results • Page 1 of 1

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Votes

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

Answer: How to formulate 2 factor nested design in DESeq2

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