Bioconductor Import

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1.0k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 5 weeks ago by solomoncharles77 • 0 • written 7 months ago by eraldagjika ▴ 20

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453

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.gpr raw Agilent MicroarrayData import

updated 19 months ago by Gordon Smyth 47k • written 19 months ago by irina.st.louis4 • 0

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856

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import

23 months ago Ofelia • 0

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1.1k

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software error BigWig import windows

3.2 years ago lsilva.m • 0

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526

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ddCt import analysis R qRTPCR

updated 3.8 years ago by Zhang, Jitao David ▴ 120 • written 3.8 years ago by mohammedtoufiq91 ▴ 10

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976

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rtracklayer fasta import Biostrings

updated 4.4 years ago by Michael Lawrence 11k • written 4.4 years ago by k.vitting.seerup ▴ 120

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2.2k

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bigwig rtracklayer import granges grangeslist

updated 5.9 years ago by Michael Lawrence 11k • written 5.9 years ago by Assa Yeroslaviz ★ 1.5k

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821

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rtracklayer gff gtf import import.gff3

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by Marlin ▴ 20

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936

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rtracklayer bigwig import

updated 6.6 years ago by Michael Lawrence 11k • written 6.6 years ago by zx8754 ▴ 10

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1.9k

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rtracklayer import bed files

7.2 years ago jmr • 0

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2.1k

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rtracklayer import bed

updated 7.2 years ago by Michael Lawrence 11k • written 7.2 years ago by Peter Hickey ▴ 650

11 results • Page 1 of 1

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Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10

First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…

Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k

I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…

Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170

I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!

Answer: error in ChAMP loading file by jenniferbrowngates • 0

I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …

Votes

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

Comment: Interpret plot from DiffBind

Awards • All

Scholar to Tiago C. Silva ▴ 270