Bioconductor TimeSeriesExperiment

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Proteomics limma repeatedmeasures TimeSeriesExperiment

11 months ago proteome_AO • 0

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1.3k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 5 months ago by solomoncharles77 • 0 • written 11 months ago by eraldagjika ▴ 20

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433

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DESeq2 TimeSeriesExperiment

updated 12 months ago by Michael Love 40k • written 12 months ago by Jason • 0

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515

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DESeq2 single-timeseries TimeSeriesExperiment

updated 12 months ago by Michael Love 40k • written 12 months ago by Jigyasa • 0

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438

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DESeq2 MultipleFactors TimeSeriesExperiment

updated 13 months ago by Michael Love 40k • written 13 months ago by Maria • 0

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643

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TimeSeriesExperiment RNASeq design DESeq2

updated 22 months ago by Michael Love 40k • written 22 months ago by Kesava • 0

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591

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TimeSeriesExperiment Regression top limma

updated 2.1 years ago by James W. MacDonald 63k • written 2.1 years ago by Eleni • 0

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LRT Design DESeq2 doseResponse TimeSeriesExperiment

updated 2.1 years ago by Michael Love 40k • written 2.1 years ago by Mari • 0

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640

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TimeSeriesExperiment

updated 2.4 years ago by Michael Love 40k • written 2.4 years ago by curiousmind007 ▴ 10

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692

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QTL fourier TimeSeriesExperiment timecoursedata

2.5 years ago Daphne • 0

10 results • Page 1 of 1

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

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