Showing : UPC • reset
4
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13
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2.4k
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Why is batch effect correction an option in SCAN.UPC normalization?
scan.upc upc normalization batch effect correction
updated 6.3 years ago by ▴ 600 • written 6.3 years ago by • 0
0
votes
2
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1.6k
views
UPC correction for GC content?
scan.upc upc_generic_expressionset upc
updated 8.7 years ago by ▴ 600 • written 8.7 years ago by • 0
0
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2
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1.6k
views
UPC method giving error for Microarray dataset
scan.upc UPC
updated 8.9 years ago by ▴ 600 • written 8.9 years ago by ▴ 20
0
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1
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1.3k
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Error with SCAN.UPC UPC_RNASeq method
scan.upc RNA-Seq UPC
8.9 years ago vn • 0
0
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1
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1.3k
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UPC RNA-Seq individual samples
scan.upc upc rnaseq
updated 8.9 years ago by ▴ 600 • written 8.9 years ago by ▴ 30
5 results • Page 1 of 1
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Comment: Appropriate ways to filter counts data for voom/limma by dorothylminter • 0
The proper way to filter count data for voom/limma emphasizes the importance of choosing the right filtering technique to enhance detection…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Comment: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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