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Vranges
•
reset
3
votes
5
replies
3.0k
views
Add Custom Annotations to Multi-Sample VCF with VariantAnnotation() package
variantannotation
granges
DNAStringSetList
findoverlaps
Vranges
9.2 years ago
summerela
• 0
2
votes
3
replies
2.3k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
9.2 years ago
summerela
• 0
3
votes
9
replies
2.1k
views
SomaticSignatures mutationContext (char ',') not in lookup table
SomaticSignatures mutationContext
VRanges
updated 8.7 years ago by
Julian Gehring
★ 1.3k • written 8.7 years ago by
tesa.severson
▴ 10
1
vote
4
replies
1.8k
views
Converting VCF to VRanges
somaticsignatures
vranges
updated 7.9 years ago by
Julian Gehring
★ 1.3k • written 7.9 years ago by
arsala521
▴ 10
3
votes
4
replies
1.7k
views
Problem when transforming Platypus vcf to VRanges
variantannotation
vcf
readvcf
vranges
updated 5.9 years ago by
Michael Lawrence
★ 11k • written 5.9 years ago by
david.mas
• 0
1
vote
2
replies
1.6k
views
Trouble while concatenating VRanges object ()
somaticsignatures
somaticsignatures package
readvcfasvranges
vranges
6.8 years ago • updated 6.7 years ago
guillaume.dachy
• 0
1
vote
2
replies
1.5k
views
Combining GRange/VRange objects
granges
vranges
readvcfasvranges
somaticsignatures
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
jpluta26
• 0
0
votes
3
replies
1.3k
views
about VRanges and filtering somatic variants
vranges
vcf to vranges
7.4 years ago
Bogdan
▴ 670
0
votes
2
replies
1.2k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 5.9 years ago by
Valerie Obenchain
★ 6.8k • written 5.9 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
739
views
Formal class VRanges versus Large VRanges
somaticsignatures
vranges
readvcfasvranges
5.7 years ago
guillaume.dachy
• 0
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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