Bioconductor Abarray

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Abarray error ABI Human Genome Survey V2

7.5 years ago judemtaylor • 0

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probe ABarray probe ABarray

13.5 years ago Iain Gallagher ▴ 930

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Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN

updated 14.1 years ago by Guillaume Meurice ▴ 210 • written 14.1 years ago by Dana.Stanley@csiro.au ▴ 110

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GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter

updated 14.1 years ago by Jenny Drnevich ★ 2.0k • written 14.1 years ago by Dana.Stanley@csiro.au ▴ 110

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GO TimeCourse genefilter timecourse ABarray preprocessCore GeneSelector GO TimeCourse

14.1 years ago Dennis.Burian@faa.gov ▴ 90

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ABarray ABarray

updated 15.3 years ago by Heidi Dvinge ★ 2.0k • written 15.3 years ago by Brian Diggs ▴ 30

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ABarray ABarray

16.1 years ago Priyanka Jain ▴ 20

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ABarray ABarray

16.1 years ago Priyanka Jain ▴ 20

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Cancer ABarray Cancer ABarray

updated 16.1 years ago by SimonNoël ▴ 450 • written 16.1 years ago by Hervé Pagès 16k

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ABarray ABarray

updated 16.1 years ago by Thomas Hampton ▴ 750 • written 16.1 years ago by SimonNoël ▴ 450

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ABarray ABarray

17.8 years ago Sabah Khalid ▴ 10

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ABarray ABarray

updated 18.5 years ago by James W. MacDonald 68k • written 18.5 years ago by Alison Ziesel ▴ 60

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Comment: EuroBioC2024 abstract submission is open! by rajilrfaze • 0

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Comment: p-adjusted values in multiple comparisons by ocanorocabayera • 0

Thank you Gordon for your thorough reply. It seems when MDS-plotting the obtained object from 'voom', that the points do not cluster togeth…

Comment: Are voomByGroup and voomLmFit compatible? by Gordon Smyth 52k

Not sure what "points" you are referring to, or what you mean by them being "weighted".

Answer: p-adjusted values in multiple comparisons by Gordon Smyth 52k

If your data was completely random, with no truly differentially expressed (DE) genes, then you would expect to get nearly 5% of the p-valu…

Answer: Are voomByGroup and voomLmFit compatible? by Gordon Smyth 52k

voomByGroup isn't part of Bioconductor, so questions about it should be send to the voomByGroup issues page. I haven't brought voomByGroup…

Votes

Answer: p-adjusted values in multiple comparisons

Comment: Very different log2 Fold changes with DESeq2 and explict calculation

Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?

Answer: Very different log2 Fold changes with DESeq2 and explict calculation

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Popular Question to Pablo marin-garcia ▴ 90