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ABarray process error for ABI Human Genome Survey V2 data set
Abarray error ABI Human Genome Survey V2
7.1 years ago judemtaylor • 0
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AB Rat Genome Survey Microarray
probe ABarray probe ABarray
13.1 years ago Iain Gallagher ▴ 930
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2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 13.7 years ago by ▴ 210 • written 13.7 years ago by ▴ 110
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2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 13.7 years ago by ★ 2.0k • written 13.7 years ago by ▴ 110
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Bioconductor Digest, Vol 100, Issue 28
GO TimeCourse genefilter timecourse ABarray preprocessCore GeneSelector GO TimeCourse
13.7 years ago Dennis.Burian@faa.gov ▴ 90
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Import files from Applied Biosystems 7900HT?
ABarray ABarray
updated 14.9 years ago by ★ 2.0k • written 14.9 years ago by ▴ 30
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Fwd: Urgent..........Problem in using ABarray
ABarray ABarray
15.7 years ago Priyanka Jain ▴ 20
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Urgent..........Problem in using ABarray
ABarray ABarray
15.7 years ago Priyanka Jain ▴ 20
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Venn Diagram
Cancer ABarray Cancer ABarray
updated 15.7 years ago by ▴ 450 • written 15.7 years ago by 16k
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Venn Diagram
ABarray ABarray
updated 15.7 years ago by ▴ 750 • written 15.7 years ago by ▴ 450
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ABarray
ABarray ABarray
17.4 years ago Sabah Khalid ▴ 10
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Problem with ABarray package
ABarray ABarray
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 60
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Comment: DESEQ2 looking at main effects while controlling for a continuous variable by James W. MacDonald 68k
The covariate is accounted for when you fit the model, so you don't need to do anything with it at the contrast step. You don't need a con…
Comment: DESEQ2 looking at main effects while controlling for a continuous variable by Lennie • 0
Thank you so much for taking the time and for the detailed explanation! I was wondering, in your numeric contrast of c(1, -1, 0,0,0), doe…
Answer: DESEQ2 looking at main effects while controlling for a continuous variable by James W. MacDonald 68k
If you use a factor effects model (with an intercept), then you will have a baseline group (the intercept), and all other coefficients exce…
Comment: Issue with DECIPHER::IdTaxa by Daniel • 0
The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k
I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…
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Answer: DESEQ2 looking at main effects while controlling for a continuous variable
Use of clusterProfiler : Error in testForValidKeytype(x, keytype)
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
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