Bioconductor Abarray

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Abarray error ABI Human Genome Survey V2

7.8 years ago judemtaylor • 0

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probe ABarray probe ABarray

13.8 years ago Iain Gallagher ▴ 930

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Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN

updated 14.4 years ago by Guillaume Meurice ▴ 210 • written 14.4 years ago by Dana.Stanley@csiro.au ▴ 110

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GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter

updated 14.4 years ago by Jenny Drnevich ★ 2.0k • written 14.4 years ago by Dana.Stanley@csiro.au ▴ 110

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GO TimeCourse genefilter timecourse ABarray preprocessCore GeneSelector GO TimeCourse

14.4 years ago Dennis.Burian@faa.gov ▴ 90

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ABarray ABarray

updated 15.6 years ago by Heidi Dvinge ★ 2.0k • written 15.6 years ago by Brian Diggs ▴ 30

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ABarray ABarray

16.4 years ago Priyanka Jain ▴ 20

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ABarray ABarray

16.4 years ago Priyanka Jain ▴ 20

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Cancer ABarray Cancer ABarray

updated 16.4 years ago by SimonNoël ▴ 450 • written 16.4 years ago by Hervé Pagès 16k

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ABarray ABarray

updated 16.4 years ago by Thomas Hampton ▴ 750 • written 16.4 years ago by SimonNoël ▴ 450

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ABarray ABarray

18.1 years ago Sabah Khalid ▴ 10

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ABarray ABarray

updated 18.8 years ago by James W. MacDonald 68k • written 18.8 years ago by Alison Ziesel ▴ 60

12 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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