Showing : acgh • reset
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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1.1k
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analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.4 years ago Adeolu Adewoye ▴ 40
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1.3k
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Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
18.0 years ago Seth Falcon ★ 7.4k
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Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
19.9 years ago grischa tödt ▴ 30
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1.0k
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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0
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1.1k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago Goeman, J.J. MSTAT ▴ 150
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0
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1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago rgentleman ★ 5.5k
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5
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1.0k
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Problems with aCGH library
aCGH aCGH aCGH aCGH
19.5 years ago Christopher, Neil NIH/NCI ▴ 70
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1
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688
views
aCGH modify plotting method
aCGH aCGH aCGH aCGH
updated 19.4 years ago by 65k • written 19.4 years ago by ▴ 70
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0
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629
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aCGH problem
aCGH aCGH aCGH aCGH
19.4 years ago Christopher, Neil NIH/NCI ▴ 70
0
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0
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671
views
help needed for aCGH package
aCGH Genetics aCGH aCGH Genetics aCGH
19.2 years ago Alberto Goldoni ▴ 360
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1
reply
742
views
help needed for aCGH package
aCGH aCGH aCGH aCGH
updated 19.2 years ago by 21k • written 19.2 years ago by ★ 7.4k
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1.1k
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Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
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1
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827
views
problem with getting the right plot in aCGH
aCGH aCGH aCGH aCGH
updated 18.8 years ago by ★ 1.8k • written 18.8 years ago by ▴ 30
0
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0
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1.4k
views
Problem installing rmutil/repeated
aCGH aCGH aCGH aCGH
18.8 years ago J-C. Marioni ▴ 30
0
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0
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781
views
Problems with aCGH library
aCGH affy aCGH aCGH affy aCGH
18.8 years ago Justin Borevitz ▴ 170
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6
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1.6k
views
ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.6 years ago by ▴ 190 • written 18.6 years ago by ★ 7.4k
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3
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1.0k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
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900
views
scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
17.9 years ago Steven McKinney ▴ 310
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0
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1.1k
views
aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
17.4 years ago Sean Davis 21k
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1
reply
709
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.4 years ago by 21k • written 17.4 years ago by ★ 1.9k
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3
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869
views
aCGH install requied sma
aCGH aCGH aCGH aCGH
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 20
0
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1
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878
views
Import GEO Soft format
aCGH Cancer aCGH aCGH Cancer aCGH
updated 17.4 years ago by ▴ 500 • written 17.4 years ago by ★ 1.9k
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0
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1.2k
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flagging spots in marray
aCGH Microarray Normalization GO Cancer Biobase annotate genefilter affy affydata limma
17.4 years ago Gordon Smyth 50k
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2
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1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
0
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0
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695
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aCGH data format
aCGH aCGH aCGH aCGH
17.3 years ago Lee, Jason Thanh ▴ 20
0
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0
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505
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acgh process problem
aCGH Cancer aCGH aCGH Cancer aCGH
17.2 years ago Daniel Brewer ★ 1.9k
0
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0
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751
views
how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
17.2 years ago Ruppert Valentino ▴ 270
0
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0
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916
views
aCGH: using T instead of TRUE
aCGH Cancer aCGH aCGH Cancer aCGH
17.2 years ago Ramon Diaz ★ 1.1k
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2
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958
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snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 90
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1
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1.3k
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snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.9 years ago Steven McKinney ▴ 310
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2
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1.0k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
16.9 years ago Ian Roberts ▴ 70
0
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0
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749
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
16.9 years ago Ian Roberts ▴ 70
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1
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1.2k
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Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
16.8 years ago Benjamin Otto ▴ 830
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0
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680
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
16.7 years ago Lyudmila Mikhaylova ▴ 20
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2
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1.2k
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Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
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4
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1.4k
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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690
views
aCGH package error: MAD
aCGH aCGH aCGH aCGH
16.5 years ago affy snp ▴ 640
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1.2k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
16.3 years ago Vincent J. Carey, Jr. 6.7k
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1
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797
views
Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 210
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3
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1.2k
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
16.1 years ago pingzhao Hu ▴ 210
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2
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1.2k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 15.9 years ago by ★ 2.4k • written 15.9 years ago by ★ 1.9k
0
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953
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
14.3 years ago Anguraj Sadanandam ▴ 10
0
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0
replies
717
views
A question about criteria for calling gain and loss in aCGH data
aCGH Cancer aCGH aCGH Cancer aCGH
15.8 years ago affy snp ▴ 640
0
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0
replies
1.2k
views
Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
11.5 years ago Guest User ★ 13k
0
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2
replies
1.2k
views
CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 15.6 years ago by ▴ 110 • written 15.6 years ago by ▴ 40
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1
reply
2.0k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 300
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.6 years ago • updated 15.5 years ago Patrick Aboyoun ★ 1.6k
0
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2
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3.8k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 8.8 years ago by • 0 • written 11.1 years ago by ★ 8.2k
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4
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1.3k
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 360
50 results • Page 1 of 1
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Comment: Cannot connect to ExperimentHub server by Jiayu • 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea() by Chris • 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
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