Showing : affy • reset
1
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Obtaining pheno data from CEL files
GEO affy
6 weeks ago • updated 5 weeks ago Kurtis • 0
1
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Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
7 weeks ago Mj.A. • 0
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6
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LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?
affy affy
updated 11 weeks ago by 50k • written 19.1 years ago by ★ 1.1k
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frma normalization
frmaTools affy
updated 12 weeks ago by 65k • written 3 months ago by • 0
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2.1k
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globaltest question
Pathways probe affy Pathways probe affy
written 17.7 years ago by ▴ 30
0
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5
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2.0k
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Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 10.4 years ago by ★ 13k
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6
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2.2k
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Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 6 months ago by ★ 4.1k • written 17 months ago by • 0
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2
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1.4k
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Minimum expression threshold?
multtest affy multtest affy
updated 9 months ago by • 0 • written 20.7 years ago by ▴ 20
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641
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affy package and SNP arrays
crlmm hapmapsnp6 genomewidesnp6Crlmm affy
updated 10 months ago by ★ 3.9k • written 10 months ago by 6.7k
9 results • Page 1 of 1
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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