Bioconductor Affy

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affy

updated 7 days ago by James W. MacDonald 66k • written 9 days ago by pickingastar • 0

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491

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GEO affy

7 weeks ago • updated 6 weeks ago Kurtis • 0

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248

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maplot_function rma_function ExpressionSet MicroarrayData affy

8 weeks ago Mj.A. • 0

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1.3k

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affy affy

updated 12 weeks ago by Gordon Smyth 50k • written 19.1 years ago by SAURIN ★ 1.1k

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391

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frmaTools affy

updated 3 months ago by James W. MacDonald 66k • written 3 months ago by michelafrancesconi8 • 0

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2.1k

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Pathways probe affy Pathways probe affy

written 17.7 years ago by mike Ad. ▴ 30

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2.0k

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Annotation affy oligo ffpe Annotation affy oligo ffpe

written 10.4 years ago by Guest User ★ 13k

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2.2k

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Bioconductor Install affy

updated 6 months ago by ATpoint ★ 4.2k • written 18 months ago by laujihen • 0

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1.4k

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multtest affy multtest affy

updated 9 months ago by Amruta • 0 • written 20.7 years ago by Bob ▴ 20

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664

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crlmm hapmapsnp6 genomewidesnp6Crlmm affy

updated 11 months ago by Kevin Blighe ★ 3.9k • written 11 months ago by Vincent J. Carey, Jr. 6.7k

10 results • Page 1 of 1

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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k

I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…

Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by Guido Hooiveld ★ 4.0k

After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…

Answer: Error in gseDO function by Guido Hooiveld ★ 4.0k

Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…

Comment: GSVA function by Robert Castelo ★ 3.3k

No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …

Comment: conumee with Infinium MethylationEPIC v2.0 by sgomez • 0

Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840

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A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

A: DiffBind Batch Effect

C: DiffBind Batch Effect

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Popular Question to Robert Castelo ★ 3.3k