Bioconductor Allelicimbalance

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DESeq2 AllelicImbalance edgeR RNASeq

updated 2.9 years ago by Michael Love 42k • written 2.9 years ago by Katya • 0

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2.1k

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edger allelicimbalance

8.1 years ago • updated 8.0 years ago ugwu.nelson ▴ 10

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992

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AllelicImbalance

updated 8.5 years ago by lasfol ▴ 10 • written 8.5 years ago by sannysandra93 • 0

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1.5k

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allelicimbalance

updated 8.9 years ago by Jesper Robert Gadin ▴ 20 • written 9.2 years ago by JK ▴ 10

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1.3k

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allelicimbalance

updated 8.9 years ago by Jesper Robert Gadin ▴ 20 • written 9.2 years ago by JK ▴ 10

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1.2k

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allelicimbalance getallelecounts

updated 9.3 years ago by Valerie Obenchain ★ 6.8k • written 9.3 years ago by JK ▴ 10

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1.1k

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allelicimbalance

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by JK ▴ 10

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1.4k

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RNASeq Cancer trio AllelicImbalance RNASeq Cancer trio AllelicImbalance

updated 10.3 years ago by Jesper Robert Gadin ▴ 20 • written 10.3 years ago by Tim Triche, Jr. ▴ 10

8 results • Page 1 of 1

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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …

Comment: deseq2 results by ATpoint ★ 4.1k

> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…

Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k

It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Popular Question to DevelopingHippo • 0

Scholar to Robert Castelo ★ 3.3k

Popular Question to Gyan Prakash Mishra ▴ 10