Bioconductor Altcdfenvs

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affymetrix microarrays frmatools altcdfenvs

updated 7.9 years ago by Matthew McCall ▴ 830 • written 7.9 years ago by osieman52 • 0

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cdf probe affy altcdfenvs cdf probe affy altcdfenvs

updated 14.6 years ago by James W. MacDonald 68k • written 14.6 years ago by Ariel Grostern ▴ 80

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cdf probe affy altcdfenvs cdf probe affy altcdfenvs

14.6 years ago Ariel Grostern ▴ 80

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cdf probe affy altcdfenvs cdf probe affy altcdfenvs

14.6 years ago Ariel Grostern ▴ 80

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probe altcdfenvs probe altcdfenvs

updated 15.2 years ago by Laurent Gautier ★ 2.3k • written 15.2 years ago by Jack Luo ▴ 450

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cdf probe altcdfenvs cdf probe altcdfenvs

19.7 years ago michael driscoll ▴ 30

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probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs

updated 20.2 years ago by lgautier@altern.org ▴ 950 • written 20.2 years ago by Norman Pavelka ▴ 190

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altcdfenvs altcdfenvs

updated 20.2 years ago by lgautier@altern.org ▴ 950 • written 20.2 years ago by Nicholas Lewin-Koh ▴ 430

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cdf affy altcdfenvs cdf affy altcdfenvs

updated 20.5 years ago by Sean Davis 21k • written 20.5 years ago by Rifat Hamoudi ▴ 30

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probe affy altcdfenvs probe affy altcdfenvs

20.6 years ago Mette Langaas ▴ 10

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cdf probe altcdfenvs cdf probe altcdfenvs

20.8 years ago Wu, Xiwei ▴ 350

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GO cdf PROcess altcdfenvs GO cdf PROcess altcdfenvs

21.5 years ago Lana Schaffer ▴ 80

12 results • Page 1 of 1

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Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0

Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…

Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

I think that some historical context will help here. Aaron Lun was a PhD student in my Lab back in 2015, and the analysis approach that he …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You just need the mouse identifier (controls baseline) and the group specific allelic effect.

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0

Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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