Showing : altcdfenvs • reset
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How to create vectors (makeVectorsAffyBatch) , using own cdf
affymetrix microarrays frmatools altcdfenvs
updated 6.1 years ago by ▴ 830 • written 6.1 years ago by • 0
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altcdfenvs: mapping probes and creating new probe sets: guidance requested
cdf probe affy altcdfenvs cdf probe affy altcdfenvs
updated 12.8 years ago by 65k • written 12.8 years ago by ▴ 80
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Resend: altcdfenvs: mapping probes and creating new probe sets: guidance requested
cdf probe affy altcdfenvs cdf probe affy altcdfenvs
12.8 years ago Ariel Grostern ▴ 80
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Converting makeProbePackage in AnnotationDbi to permit PM-only arrays
cdf probe affy altcdfenvs cdf probe affy altcdfenvs
12.8 years ago Ariel Grostern ▴ 80
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error msg for probe match (altcdfenvs)
probe altcdfenvs probe altcdfenvs
updated 13.5 years ago by ★ 2.3k • written 13.5 years ago by ▴ 440
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probe --> probe set mapping in CDF library files
cdf probe altcdfenvs cdf probe altcdfenvs
18.0 years ago michael driscoll ▴ 30
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Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 18.4 years ago by ▴ 950 • written 18.4 years ago by ▴ 190
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918
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Creating a CDFenv without cdf file
altcdfenvs altcdfenvs
updated 18.5 years ago by ▴ 950 • written 18.5 years ago by ▴ 430
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959
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Mapping CDF from different array platforms
cdf affy altcdfenvs cdf affy altcdfenvs
updated 18.7 years ago by 21k • written 18.7 years ago by ▴ 30
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affy: adding new probe set definitions and making rma expression summaries
probe affy altcdfenvs probe affy altcdfenvs
18.8 years ago Mette Langaas ▴ 10
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RE: altcdfenvs error
cdf probe altcdfenvs cdf probe altcdfenvs
19.1 years ago Wu, Xiwei ▴ 350
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FW: makecdfenv()
GO cdf PROcess altcdfenvs GO cdf PROcess altcdfenvs
19.8 years ago Lana Schaffer ▴ 80
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Comment: DESeq filtering specific to contrasts by Michael Love 41k
Right, I was suggesting subsetting as a valid choice for "treatment and control samples at each timepoint"
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value by Dev • 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize by James W. MacDonald 65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR? by i.atanasoai • 0
Understood, Thank you very much for the reply, very kind.
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Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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