Bioconductor Ape

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910

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R ape dnds nan nanotubes

2.0 years ago Working • 0

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4.0k

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ape bootstrap node phylogenetic tree

9.5 years ago wd ▴ 30

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1.3k

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supraHex nlme hexbin ape

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by agneet257 • 0

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1.3k

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ape msa

updated 2.6 years ago by UBod ▴ 300 • written 3.0 years ago by João Tadeu • 0

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1.5k

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ape phyloseq dist metagenomics

7.6 years ago David ▴ 860

5 results • Page 1 of 1

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

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