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barplot
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padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot
barplot
clusterProfiler
11 months ago
Eva
▴ 10
0
votes
0
replies
716
views
How to draw module significance barplot?
module_significance
barplot
WGCNA
24 months ago
Sooni
▴ 10
0
votes
1
reply
3.0k
views
how to sort y-axis category of GO result
GO.db
clusterProfiler
dotplot
barplot
3.4 years ago
Yang
• 0
4
votes
2
replies
8.3k
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How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
clusterprofiler
enrichGO
barplot
dotplot
6.5 years ago
MAP
▴ 10
0
votes
2
replies
3.3k
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barplot with ggplot2 for gene expression
ggplot2
barplot
gene expression
gene expression
updated 9.5 years ago by
James W. MacDonald
68k • written 9.5 years ago by
alakatos
▴ 130
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Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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