Bioconductor BaseMean

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892

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DESeq2 diferentialabundance 16srRNA baseMean

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by PhD_student_microbiome • 0

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7.0k

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basemean DESeq2

updated 3.3 years ago by ATpoint ★ 5.0k • written 3.7 years ago by msellabenton • 0

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10k

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deseq2 baseMean differential gene expression rnaseqgene

updated 6.9 years ago by swbarnes2 ★ 1.4k • written 6.9 years ago by melkile26 • 0

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2.7k

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deseq2 diffbind basemean summarizedexperiment

7.5 years ago rbronste ▴ 60

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1.3k

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deseq results baseMean

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by batmaiden • 0

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1.8k

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deseq2 baseMean cooks distance

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by da.de ▴ 30

6 results • Page 1 of 1

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Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k

Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…

Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k

Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…

Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…

Comment: Error in creating BSGenome package by Nguyen • 0

I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…

Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k

There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…

Votes

A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi

Answer: Clarification on counting in Rsubread (featureCounts)

Comment: Clarification on counting in Rsubread (featureCounts)

C: ControlGenes/ housekeeping genes Deseq2

Answer: Clarification on counting in Rsubread (featureCounts)

Awards • All

Popular Question to mohammedtoufiq91 ▴ 10

Popular Question to Lluís Revilla Sancho ▴ 760

Commentator to James W. MacDonald 68k

Great Question to fl ▴ 20