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Showing :
batcheffect
•
reset
3
votes
5
replies
826
views
Getting batch corrected counts after RUVSeq
BatchEffect
RUVSeq
RNASeq
DESeq2
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
Shashank
• 0
3
votes
4
replies
854
views
lfcShrink() and batch effects in DESeq2
BatchEffect
lfcshrink
RNA-seq
DESeq2
8 months ago
Eva
▴ 10
2
votes
5
replies
1.1k
views
DESeq2 remove batch effect
BatchEffect
RNASeqData
WGCNA
DESeq2
updated 9 days ago by
Ashley
• 0 • written 10 months ago by
zxc741xb
• 0
2
votes
9
replies
273
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2
RUVSeq
RUVseq
BatchEffect
DES
updated 1 day ago by
James W. MacDonald
65k • written 1 day ago by
Alexandre
• 0
2
votes
5
replies
1.3k
views
removing the batch effect for vst counts and defining the batches in removeBatchEffect function
DESeq2
BatchEffect
limma
updated 8 months ago by
Gordon Smyth
50k • written 8 months ago by
Sara
• 0
2
votes
4
replies
615
views
Correct the batch effect in methylation analysis in R
BatchEffect
limma
methylationArrayAnalysis
updated 4 months ago by
Gordon Smyth
50k • written 4 months ago by
kyj2226
• 0
2
votes
3
replies
1.1k
views
bulk RNA-seq analysis using R : batch effect : One question concerning Combat-seq and one question concerning DESeq2 design = batch + condition
BatchEffect
sva
DESeq2
RNASeqData
limma
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
D-Bug
▴ 10
2
votes
4
replies
1.2k
views
RNAseq : identical sample-sample distances after using limma::removeBatchEffect
DESeq2
RNASeq
BatchEffect
limma
updated 7 months ago by
Michael Love
41k • written 2.9 years ago by
athiebaut
• 0
2
votes
3
replies
1.1k
views
PCA for QC should include subset of top variable genes or full set of genes in RNAseq data?
BatchQC
RNASeqData
sva
BatchEffect
updated 10 months ago by
ATpoint
★ 4.0k • written 10 months ago by
amnahsiddiqa
▴ 10
2
votes
1
reply
247
views
Limma Question
DESeq2
BatchEffect
limma
RNASeq
updated 8 weeks ago by
Michael Love
41k • written 8 weeks ago by
sap275
▴ 10
1
vote
2
replies
962
views
Batch effect between biological replicates
BatchEffect
DESeq2
11 months ago
gtechbio
▴ 10
1
vote
1
reply
448
views
Best way to handle batch effects from difference Mice?
RNASeqData
BatchEffect
edgeR
limma
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
Sara
• 0
1
vote
1
reply
489
views
WGCNA Cluster batch effect
BatchEffect
TCGA
WGCNA
updated 10 months ago by
ATpoint
★ 4.0k • written 10 months ago by
khaserdene99
• 0
1
vote
3
replies
345
views
DESEQ2 Batch Effect
DESeq2
BatchEffect
RNASeq
updated 7 weeks ago by
swbarnes2
★ 1.3k • written 8 weeks ago by
sap275
▴ 10
1
vote
4
replies
612
views
controling for batch effect while preserving variation within repeated measures that unevenly distributed across batches
miRNA
BatchEffect
RNASeq
limma
5 months ago
Wending
• 0
0
votes
0
replies
143
views
Can I combine collinear variables into a single value
BatchEffect
limma
8 weeks ago
Harrsha
• 0
0
votes
2
replies
601
views
smallRNA-seq analysis batch correction in limma
BatchEffect
limma
9 months ago
Eleonora
• 0
0
votes
0
replies
385
views
How to go for Batch correction in RNA-seq expeiment conducted based on imbalanced Experimental design ?
RNASeqData
BatchEffect
sva
10 months ago
amnahsiddiqa
▴ 10
0
votes
5
replies
522
views
Can SVs identified from sva be used for removeBatchEffect() in DESeq2
sva
DESeq2
BatchEffect
limma
updated 3 months ago by
ATpoint
★ 4.0k • written 3 months ago by
Xiao
• 0
0
votes
2
replies
162
views
RNAseq:Technical replicates from different batches
technicalReplicates
BatchEffect
limma
RNASeq
7 days ago • updated 4 days ago
catv
• 0
0
votes
4
replies
573
views
How to correct for known and surrogate variables in DESeq2?
DESeq2
BatchEffect
sva
limma
updated 10 days ago by
Michael Love
41k • written 6 months ago by
Crystal571
• 0
0
votes
1
reply
280
views
When should I correct for batch effects
BatchEffect
SingleCellExperiment
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
NeuroDaniel
• 0
0
votes
8
replies
379
views
DESeq and SVA for batch effect
DESeq2
BatchEffect
sva
7 weeks ago
michelafrancesconi8
• 0
0
votes
1
reply
615
views
How to identify the batch informations from the sample ID?
TCGAbiolinks
BatchQC
BatchEffect
updated 8 months ago by
wrab425
• 0 • written 13 months ago by
snijesh
▴ 20
0
votes
1
reply
436
views
Batch effect adjust in model matrix
BatchEffect
edgeR
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
Giuseppe
• 0
25 results • Page
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