Bioconductor Batchqc

Showing : batchqc • reset

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501

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BatchQC BatchEffect rnaseqGene Normalization

updated 5 months ago by jessica.mcclintock ▴ 10 • written 6 months ago by Đình Vinh • 0

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610

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BatchQC BatchEffect RNASeq

updated 5 months ago by jessica.mcclintock ▴ 10 • written 6 months ago by ttt • 0

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724

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BatchQC batchinDeseq2. columnsincolData.

6 months ago Galina • 0

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1.8k

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BatchQC RNASeqData sva BatchEffect

updated 16 months ago by ATpoint ★ 4.5k • written 17 months ago by amnahsiddiqa ▴ 10

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877

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TCGAbiolinks BatchQC BatchEffect

updated 15 months ago by wrab425 • 0 • written 20 months ago by snijesh ▴ 200

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1.1k

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BatchQC

updated 3.7 years ago by Malcolm Cook ★ 1.6k • written 3.7 years ago by Josh • 0

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921

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BatchQC RNA-seq R Shiny batch-effect

4.6 years ago manninm • 0

7 results • Page 1 of 1

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Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0

https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…

Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0

https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Votes

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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