Bioconductor Bayespeak

Showing : bayespeak • reset

votes

replies

1.1k

views

BayesPeak bug

9.0 years ago balwierz ▴ 40

vote

replies

1.4k

views

bayespeak

10.0 years ago Reed ▴ 10

votes

replies

7.1k

views

Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 10.2 years ago by Gordon Smyth 52k • written 10.3 years ago by samuel collombet ▴ 140

votes

replies

2.4k

views

ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak

12.9 years ago John linux-user ▴ 210

votes

1.4k

views

AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno

13.0 years ago Julie Zhu ★ 4.3k

votes

1.2k

views

BayesPeak BayesPeak

14.0 years ago Mary Ellen Fitzpatrick ▴ 20

votes

replies

2.3k

views

ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq

updated 14.1 years ago by Jonathan Cairns ▴ 130 • written 14.1 years ago by Andreia Fonseca ▴ 810

votes

1.3k

views

BayesPeak BayesPeak

updated 14.8 years ago by Jonathan Cairns ▴ 130 • written 14.8 years ago by Binbin Liu ▴ 30

votes

replies

2.0k

views

BayesPeak BayesPeak

updated 15.2 years ago by Jonathan Cairns ▴ 130 • written 15.2 years ago by Tim Rayner ▴ 270

9 results • Page 1 of 1

Recent ...

Replies

Comment: EuroBioC2024 abstract submission is open! by rajilrfaze • 0

[Sportzfy smooth streaming APK][1] ensures zero buffering during your favorite games. [1]: https://sportzfytvapk.com.co/

Comment: p-adjusted values in multiple comparisons by ocanorocabayera • 0

Thank you Gordon for your thorough reply. It seems when MDS-plotting the obtained object from 'voom', that the points do not cluster togeth…

Comment: Are voomByGroup and voomLmFit compatible? by Gordon Smyth 52k

Not sure what "points" you are referring to, or what you mean by them being "weighted".

Answer: p-adjusted values in multiple comparisons by Gordon Smyth 52k

If your data was completely random, with no truly differentially expressed (DE) genes, then you would expect to get nearly 5% of the p-valu…

Answer: Are voomByGroup and voomLmFit compatible? by Gordon Smyth 52k

voomByGroup isn't part of Bioconductor, so questions about it should be send to the voomByGroup issues page. I haven't brought voomByGroup…

Votes

Answer: p-adjusted values in multiple comparisons

Comment: Very different log2 Fold changes with DESeq2 and explict calculation

Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?

Answer: Very different log2 Fold changes with DESeq2 and explict calculation

Awards • All

Popular Question to Pablo marin-garcia ▴ 90