Bioconductor Bayespeak

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1.1k

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BayesPeak bug

9.3 years ago balwierz ▴ 40

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1.5k

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bayespeak

10.3 years ago Reed ▴ 10

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7.3k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 10.6 years ago by Gordon Smyth 53k • written 10.6 years ago by samuel collombet ▴ 140

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ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak

13.3 years ago • updated 13.2 years ago John linux-user ▴ 210

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AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno

13.4 years ago Julie Zhu ★ 4.3k

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1.3k

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BayesPeak BayesPeak

14.3 years ago Mary Ellen Fitzpatrick ▴ 20

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2.4k

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ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq

updated 14.4 years ago by Jonathan Cairns ▴ 130 • written 14.4 years ago by Andreia Fonseca ▴ 810

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1.3k

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BayesPeak BayesPeak

updated 15.1 years ago by Jonathan Cairns ▴ 130 • written 15.1 years ago by Binbin Liu ▴ 30

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2.1k

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BayesPeak BayesPeak

updated 15.5 years ago by Jonathan Cairns ▴ 130 • written 15.5 years ago by Tim Rayner ▴ 270

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Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by TikTsoksocissalpc • 0

Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…

Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k