Showing : bayespeak • reset
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak bug
8.4 years ago balwierz ▴ 40
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3
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1.3k
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Error in bayespeak function importing data
bayespeak
9.4 years ago Reed ▴ 10
8
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9
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6.7k
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 9.6 years ago by 52k • written 9.6 years ago by ▴ 140
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8
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2.2k
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chip-seq data
ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak
12.3 years ago John linux-user ▴ 210
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1
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1.2k
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Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
12.4 years ago Julie Zhu ★ 4.3k
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1.1k
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Upgrade bioconductor to version 2.6
BayesPeak BayesPeak
13.3 years ago Mary Ellen Fitzpatrick ▴ 20
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7
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2.1k
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error in bayespeak function
ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq
updated 13.5 years ago by ▴ 130 • written 13.5 years ago by ▴ 810
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1
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1.1k
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BayesPeak and RangedData obj output
BayesPeak BayesPeak
updated 14.1 years ago by ▴ 130 • written 14.1 years ago by ▴ 30
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4
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1.8k
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BayesPeak segfault woes
BayesPeak BayesPeak
updated 14.6 years ago by ▴ 130 • written 14.6 years ago by ▴ 270
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
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Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
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EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
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Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
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