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bayespeak
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak
bug
9.2 years ago
balwierz
▴ 40
1
vote
3
replies
1.5k
views
Error in bayespeak function importing data
bayespeak
10.2 years ago
Reed
▴ 10
8
votes
9
replies
7.2k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 10.4 years ago by
Gordon Smyth
53k • written 10.4 years ago by
samuel collombet
▴ 140
0
votes
8
replies
2.5k
views
chip-seq data
ChIPSeq
chipseq
BayesPeak
ChIPSeq
chipseq
BayesPeak
13.1 years ago
John linux-user
▴ 210
0
votes
1
reply
1.4k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.2k
views
Upgrade bioconductor to version 2.6
BayesPeak
BayesPeak
14.1 years ago
Mary Ellen Fitzpatrick
▴ 20
0
votes
7
replies
2.4k
views
error in bayespeak function
ChIPSeq
GO
BSgenome
BSgenome
chipseq
BayesPeak
ChIPSeq
GO
BSgenome
BSgenome
chipseq
updated 14.3 years ago by
Jonathan Cairns
▴ 130 • written 14.3 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.3k
views
BayesPeak and RangedData obj output
BayesPeak
BayesPeak
updated 15.0 years ago by
Jonathan Cairns
▴ 130 • written 15.0 years ago by
Binbin Liu
▴ 30
0
votes
4
replies
2.1k
views
BayesPeak segfault woes
BayesPeak
BayesPeak
updated 15.4 years ago by
Jonathan Cairns
▴ 130 • written 15.4 years ago by
Tim Rayner
▴ 270
9 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
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teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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