Bioconductor Bayespeak

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989

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BayesPeak bug

8.5 years ago balwierz ▴ 40

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1.3k

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bayespeak

9.5 years ago Reed ▴ 10

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6.7k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by samuel collombet ▴ 140

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ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak

12.4 years ago John linux-user ▴ 210

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1.2k

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AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno

12.5 years ago Julie Zhu ★ 4.3k

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1.1k

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BayesPeak BayesPeak

13.4 years ago Mary Ellen Fitzpatrick ▴ 20

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2.1k

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ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq

updated 13.5 years ago by Jonathan Cairns ▴ 130 • written 13.5 years ago by Andreia Fonseca ▴ 810

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1.2k

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BayesPeak BayesPeak

updated 14.2 years ago by Jonathan Cairns ▴ 130 • written 14.2 years ago by Binbin Liu ▴ 30

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1.9k

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BayesPeak BayesPeak

updated 14.7 years ago by Jonathan Cairns ▴ 130 • written 14.7 years ago by Tim Rayner ▴ 270

9 results • Page 1 of 1

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Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.0k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Votes

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

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