Bioconductor Bayespeak

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BayesPeak bug

8.6 years ago balwierz ▴ 40

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bayespeak

9.6 years ago Reed ▴ 10

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.8 years ago by Gordon Smyth 52k • written 9.9 years ago by samuel collombet ▴ 140

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ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak

12.5 years ago John linux-user ▴ 210

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AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno

12.6 years ago Julie Zhu ★ 4.3k

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BayesPeak BayesPeak

13.6 years ago Mary Ellen Fitzpatrick ▴ 20

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ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq

updated 13.7 years ago by Jonathan Cairns ▴ 130 • written 13.7 years ago by Andreia Fonseca ▴ 810

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BayesPeak BayesPeak

updated 14.4 years ago by Jonathan Cairns ▴ 130 • written 14.4 years ago by Binbin Liu ▴ 30

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BayesPeak BayesPeak

updated 14.8 years ago by Jonathan Cairns ▴ 130 • written 14.8 years ago by Tim Rayner ▴ 270

9 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k