Showing : bayespeak • reset
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak bug
9.4 years ago balwierz ▴ 40
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Error in bayespeak function importing data
bayespeak
10.4 years ago Reed ▴ 10
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 10.6 years ago by 53k • written 10.6 years ago by ▴ 140
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chip-seq data
ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak
13.3 years ago John linux-user ▴ 210
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Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
13.4 years ago Julie Zhu ★ 4.3k
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Upgrade bioconductor to version 2.6
BayesPeak BayesPeak
14.3 years ago Mary Ellen Fitzpatrick ▴ 20
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error in bayespeak function
ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq
updated 14.4 years ago by ▴ 130 • written 14.4 years ago by ▴ 810
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BayesPeak and RangedData obj output
BayesPeak BayesPeak
updated 15.1 years ago by ▴ 130 • written 15.1 years ago by ▴ 30
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4
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2.1k
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BayesPeak segfault woes
BayesPeak BayesPeak
updated 15.5 years ago by ▴ 130 • written 15.6 years ago by ▴ 270
9 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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